Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 274 / 7e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 267 / 1e-86 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G11480 260 / 4e-84 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 258 / 2e-83 JMT jasmonic acid carboxyl methyltransferase (.1) AT5G38020 248 / 9e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 246 / 1e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 239 / 8e-76 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 238 / 1e-75 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 184 / 5e-55 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036548 [exp] 443 / 2e-152 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 421 / 1e-146 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 413 / 4e-144 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 413 / 4e-144 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 402 / 1e-138 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 253 / 2e-81 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 210 / 7e-65 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10043177 [exp] 182 / 1e-53 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10021802 [exp] 172 / 4e-51 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 409 / 9e-143 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 314 / 2e-105 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 313 / 5e-105 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 301 / 3e-100 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 271 / 1e-88 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.007G021400 [exp] 265 / 6e-86 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 259 / 7e-84 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022402 [exp] 257 / 5e-83 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 224 / 2e-70 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 219 / 6e-68 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041380 pacid=23179673 polypeptide=Lus10041380 locus=Lus10041380.g ID=Lus10041380.BGIv1.0 annot-version=v1.0 ATGAAGATCGATCAGTTGCTACACATGAATGGCGGAAAGGGAGAGACGAGCTACGCTGCAAACTCCATGCTTCAGCAAAAAGCCATAACAATGGCTAGTC AAATTACAAAGGAAGCAATCACAAGACTTATAAAGTTAACCAATCCGACAAACCGGGTAACAATCGCTGATTTGGGATGTGCTTCAGGGCCCAACACTTT CTTAGCCGTGTCAGAAATTGTTGAATCCTTTCTCAGGATTTCCGGAGAGCAAGGGCGAGAATCTCCTGAAGAGTTTCAGGTTTTTCTGAACGATCTCCCT GGAAACGATTTCAACAGCATCTTCACCTCCCTGCCAAAATTCAAACAAAAATTCAAGAAAGATTTGATTTTTTTGAATGGAGTCCCCGGTTCTTTTCACG CAAGGTTGTTCCCGGCAAAGACTCTGCACTTTGTTCACTCTTCCTATAGCCTGCAATGGCTTTCTCAGGTTCCTGAAGGACTTGAGGAAAACAAAGGGAA TGTTTGCATAGGTAGTAGTAGCCCGCCGAGTGTGTTCAAAGCATACTATGATCAGTTTCGGAACGACTTTTCGAGTTTCCTAAAGTGTCGAGCTCTGGAA ATTGTGGATGGAGGTCAAATGGTTTTGACGTTACTGGGTAGGAAGAGTGAAGACAGTTGCACAAGAAACACTTACTTCATCTGGGAGCTCTTGTCCATTG TCCTCAACCAAATGGCCGTTGAGGGATTAATAGACCTGGAGAGACTGAACTCGTTCAATATCCCAAATTACTTCCCATCAATAACAGAAATCGAAGGTGA AACCCATAAACAAGGCTGCTTCACCATAGACCGCACAATGGTTACGGAAGCGAGCTGGAATCCCTACGAAGGGGAGGAGGAATCGGACCTCTCAGAAGCC ATGAAAGACGGCGGCTACAACGTGGCCAAGTACATCAGGGCCGTGGTCGAACCACTCTTGGTTCGGCAGTTTGGTTCCACGAGGGAAGTCATCGACGAGG TTTTCGACAGATATTGCGTCATTGTGTCCAAATGGATGGTTATGGTAAAAACTGAACACGTTTATATCAGCATCTCGCTCACTAAGTATAACTGA
AA sequence Show only first row Show all	>Lus10041380 pacid=23179673 polypeptide=Lus10041380 locus=Lus10041380.g ID=Lus10041380.BGIv1.0 annot-version=v1.0 MKIDQLLHMNGGKGETSYAANSMLQQKAITMASQITKEAITRLIKLTNPTNRVTIADLGCASGPNTFLAVSEIVESFLRISGEQGRESPEEFQVFLNDLP GNDFNSIFTSLPKFKQKFKKDLIFLNGVPGSFHARLFPAKTLHFVHSSYSLQWLSQVPEGLEENKGNVCIGSSSPPSVFKAYYDQFRNDFSSFLKCRALE IVDGGQMVLTLLGRKSEDSCTRNTYFIWELLSIVLNQMAVEGLIDLERLNSFNIPNYFPSITEIEGETHKQGCFTIDRTMVTEASWNPYEGEEESDLSEA MKDGGYNVAKYIRAVVEPLLVRQFGSTREVIDEVFDRYCVIVSKWMVMVKTEHVYISISLTKYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041380 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10013247 [exp]	1.0	0.8161
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10000583 [exp]	3.3	0.7213
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	5.1	0.7947
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10010448 [exp]	5.3	0.7326
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029691 [exp]	5.5	0.7106
					Lus10042018 [exp]	7.5	0.7076
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	7.7	0.7928
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	10.5	0.7406
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	21.9	0.7883
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	27.0	0.7175

Compare expression of checked genes

Lus10041380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.