Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01900 805 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G67360 675 / 0 ARA12 Subtilase family protein (.1) AT5G51750 655 / 0 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 653 / 0 Subtilase family protein (.1) AT3G14240 652 / 0 Subtilase family protein (.1) AT3G14067 642 / 0 Subtilase family protein (.1) AT4G34980 592 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 580 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 543 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 501 / 6e-167 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036546 [exp] 1435 / 0 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10007765 [exp] 656 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 652 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 651 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 643 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 642 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 637 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 634 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 626 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074600 [exp] 981 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.001G163600 [exp] 668 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 659 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 654 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 650 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 644 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 643 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 642 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.003G067000 [exp] 641 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 637 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10041382 pacid=23179826 polypeptide=Lus10041382 locus=Lus10041382.g ID=Lus10041382.BGIv1.0 annot-version=v1.0 ATGTTGGCTGTTCTAGCCTTCATTGCCACCAACACAAATGCATCAACTGAGAGACAAACATATGTAATTCATATGGACAAAACCAAGATCCCTTCGTCCC AATGGTACTATCAATCACTGCTCGATTCTGTCACCGAAACTCAAACACGAGACAAGGGAGGACAACATCACCATCATCAAGGCATGTCAACTCCCCCAAC CCTTCTCTACGCGTATGATACGGTCGTTTCGGGATTCTCCGCAAAGCTCTCCGCCACTGAGCTTGAAGCCCTGAGCCAAACGAGCGGCTTCCTCTCCGCG ATTCCTGACGAAATGCTGACCCTCCACACCACACATTCCCCGCAATTCCTCGGCCTGGAGCAAGGCCGAGGACTTTGGGGTGCTCCGAGCCTAGCCTCGG ATGTGATCATTGGGATTCTTGACACCGGGATCTGGCCCGAACACCCCAGCTTCCACGACAAGGACGTACCGTCACAATCAATGCCGTCCAATTGGAAAGG CGGCCAGTGCGAAACCGGTACAAAATTCTCTCCCACAAATTGCAACAACAAGCTCATCGGCGCTATGTCCTTCTACAAGGGCTACGAATCCGCAGCTGGA GCCATCAACGAGACAGTTGACTTCCGGTCTCCTCGTGACTCCAACGGCCACGGGACCCACACTGCTTCCACGGCAGCGGGAGGTCTTGTGGCCGGTGCAA ATTTCCTAGGGCTGGCGAACGGGTCAGCTGCCGGGATGAAGTACACTTCCAGGATTGCAGTGTATAAAGTGTGCTGGTCACTCGGATGTACTAATTCAGA CATTCTTGCTGCCATGGAGCAGGCCGTGAAAGACGGCGTGGATGTTTTATCGCTCTCATTAGGAGGCTCGCCAAAGCCCTATTACAGCGACAATGTGGCG ATCGCCTCGTTTGGTGCGGTTCAGAATGGAGTCTTTGTGGCTTGCTCGGCCGGGAATTCAGGACCGTCCAGCTCGACAGTCTCGAATAACGCTCCTTGGA TCATGACAGTGGCTGCTAGCTACACAGATCGAGGATTTCCAACCAGTATTCGTCTCGGAAATGGGGAAATCTATGAAGGGTCTTCTCTGTACTACGGCAA ACCCACCAAGCAATTGCCAATTGCTTATGCTGAAACAGCAGGTGGAAAGCAACAGGGAGCCAACTACTGCATCAACGGCTCATTAAACAAGAAGCTAGTA ATGGGCAAGATAGTAATATGCGACAGAGGAATCAACGGCAGAGCCCAAAAAGGTCAGATCGTGAAATCAGCAGGAGGAGTCGGAATGATACTCGTCAACG GCGAAAACGCCGGCGAAGAACGCTTCGCCGACCCACATATTATACCGGCGAGTTCATTAGGAGCCACAGCCGGAAAATCCCTAAAAAAGTACATAACCAC ATCAAGAAAACCAACAGCTTCAATCACCTTCAAGGGAACAAGCTACGGCTCCACTGCACCTGCAATGGCAGCATTCTCGTCCAGAGGACCCAGCTCCGTC GGCCCGGAAATAATCAAGCCAGACATTACCGCACCAGGGGTGAACATATTGGCCGCCTGGCCTCCCGGAGTCAGCCCGACCATGCTCCAAACCGACAAGA GATCCGTCCTCTTCAACATAATCTCGGGAACCTCAATGTCGTGTCCACACATAAGCGGAATCGCCGCTTTGCTGAAATCCGTCCACAAGGATTGGTCCCC GGCGGCGATCAAATCGGCGATGATGACCACCGCTTACGTTCTGGACAACAAGAACAATCCCATTACTGATTTCGGAGCTTCTTCTTCCCCGCCGGCAACC GCTTTTGCGTTCGGGTCGGGTCATGTGGACCCGGAGAGAGCAGCGGATCCGGGGCTGATCTACGATATTTCGACGGAGGATTATCTCAATCATCTCTGTA GCTTGAACTATACCTCTGCGCAGGTATCCGCGGTGATGTCCGGGAAGAGTTTCAACTGTTCTTCGAGTGATCCAGATCGAGCAGCTGGAGATCTGAATTA CCCATCTTTTGCTGTGGGTTTCAAAAGGGGTGGATCGAGAAATCAGAGTTTGAAGTTCAAGAGAACGGCGACGAACGTAGGGGAGAGCGGTAGGTACGAG GTGAAAGTGGAGGAGCCCGTTGGAGTTTCAGTGAAGGTGGAGCCGAAGGTTTTGGAGTTTGTGAAATTTGGAGAGAAATTGAGTTACGAAGTGGAATTCG TTGCCGGTGGTGATGGTGGATCTGGTTCGGGTACGTCATCGTTTGGGACAGTTGTTTGGTCGTCGGGGAAATACTCTGTTCGGAGTCCAATTGCAGTCAC CTGGGTACAATAG
AA sequence Show only first row Show all	>Lus10041382 pacid=23179826 polypeptide=Lus10041382 locus=Lus10041382.g ID=Lus10041382.BGIv1.0 annot-version=v1.0 MLAVLAFIATNTNASTERQTYVIHMDKTKIPSSQWYYQSLLDSVTETQTRDKGGQHHHHQGMSTPPTLLYAYDTVVSGFSAKLSATELEALSQTSGFLSA IPDEMLTLHTTHSPQFLGLEQGRGLWGAPSLASDVIIGILDTGIWPEHPSFHDKDVPSQSMPSNWKGGQCETGTKFSPTNCNNKLIGAMSFYKGYESAAG AINETVDFRSPRDSNGHGTHTASTAAGGLVAGANFLGLANGSAAGMKYTSRIAVYKVCWSLGCTNSDILAAMEQAVKDGVDVLSLSLGGSPKPYYSDNVA IASFGAVQNGVFVACSAGNSGPSSSTVSNNAPWIMTVAASYTDRGFPTSIRLGNGEIYEGSSLYYGKPTKQLPIAYAETAGGKQQGANYCINGSLNKKLV MGKIVICDRGINGRAQKGQIVKSAGGVGMILVNGENAGEERFADPHIIPASSLGATAGKSLKKYITTSRKPTASITFKGTSYGSTAPAMAAFSSRGPSSV GPEIIKPDITAPGVNILAAWPPGVSPTMLQTDKRSVLFNIISGTSMSCPHISGIAALLKSVHKDWSPAAIKSAMMTTAYVLDNKNNPITDFGASSSPPAT AFAFGSGHVDPERAADPGLIYDISTEDYLNHLCSLNYTSAQVSAVMSGKSFNCSSSDPDRAAGDLNYPSFAVGFKRGGSRNQSLKFKRTATNVGESGRYE VKVEEPVGVSVKVEPKVLEFVKFGEKLSYEVEFVAGGDGGSGSGTSSFGTVVWSSGKYSVRSPIAVTWVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	0	1
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	1.4	0.8767
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	2.8	0.8557
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	3.5	0.8484
AT1G06980			unknown protein		Lus10038171 [exp]	4.5	0.8323
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10018467 [exp]	4.6	0.7958
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10013009 [exp]	4.9	0.8075
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	6.5	0.8227
AT1G69160			unknown protein		Lus10019172 [exp]	7.3	0.8267
AT2G40820			unknown protein		Lus10038998 [exp]	9.2	0.8416
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	10.1	0.7976

Compare expression of checked genes

Lus10041382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.