Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31010 503 / 2e-178 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 309 / 6e-103 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT2G20020 287 / 2e-90 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 273 / 3e-86 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 65 / 4e-11 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 54 / 2e-07 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G27550 46 / 3e-05 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G29750 44 / 0.0002 CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 43 / 0.0004 ATCFM3B CRM family member 3B (.1) AT5G16180 42 / 0.0009 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036545 [exp] 674 / 0 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 313 / 3e-104 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 283 / 1e-89 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 281 / 8e-89 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 276 / 2e-87 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 276 / 8e-87 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 269 / 3e-83 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10019623 [exp] 216 / 5e-68 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 155 / 8e-43 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074400 [exp] 541 / 0 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 319 / 9e-107 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.006G163100 [exp] 275 / 1e-85 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 265 / 3e-83 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 63 / 1e-10 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 56 / 3e-08 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G343700 [exp] 46 / 3e-05 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.017G116700 [exp] 43 / 0.0004 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.001G350801 [exp] 42 / 0.0006 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10041383 pacid=23179870 polypeptide=Lus10041383 locus=Lus10041383.g ID=Lus10041383.BGIv1.0 annot-version=v1.0 ATGTACCTCCGGTCACTCGTCGCCAGCCGGAATAACCCCCCGCCGCATCTCTCGTTCACCTTGGCGTTCTTGTCGCGCCACCTATGTTCCTCATCCGCCG CCTCTTCGAAGCTCCGCGATTACTACGCCTTCGATCCTCCGTCTTCGCTCTCCCCCGAAAATCGGCCGAGCTATGACAATCCAGCTCCTCCGGGGAAAAA GCAGAAAGAGCGGTACCGGCCGCCGTCTTCTCTAAACCAGTCCAGAAAGCCGATGCACTCCGACCTTCCGTTTGATTTTCGGTACAGCTACTCGGAGAGC AGCCAGTCGGCTAGACCAATCGGCCTCAGGGAGCCGAAATATTCCCCTTTCGGGCCACGACGGCTTGACCGGAAATGGACCGGAGTTTGCGCCCCTGCGG TTGATCCGAAAGTGAAATCGGTCGACGCAGCGGAGGATCAGAATTTGGAGGAGGAGAGACGGAGAAGGAGGGAGAGGATACAGGGGGAGCCACTCACGAA CGCTGAGAGGAAGATTTTGGTGCAGAGTTGTCAGAGGAATAAGACCAAAAGGCAAATCAATCTCGGGAGAGATGGATTCACTCACAACATGCTGAATGAT GTTCATAACAATTGGAGACATGCTGAAGCAGTTAGGATCAAGTGTCTAGGTGTTCCCACTGTTGACATGAAGAATGTTTGTGCTCAGCTTGAGGATAAAA CATTTGGCAAGATCATTCATAGACATGGTGGTCAGCTGGTGTTGTATAGAGGTCGAAATTATAATCCAAAAAAAAGGCTTCGTGTTCCATTGATGCTGTG GACGCCCCGGGAGCCTGTATATCCGAAGCTTATCAAAACAACGATCGAAGGGTTAAGTATTGATGAAACAAAGGAAATGAGAAAGAAGGGTCTGGCTGTT CCTGCACTCACAAGACTTGCCAAGAACGGTTACTATGGCAGTCTTGTACCCATGGTGAGAGATGCTTTTATTGTAAGTGAGCTGGTTCGCATAGACTGCC AAGGACTTGAGAGGAGCGATTACAAGAAAATAGGCTGCAAACTAAGGGACTTGGTTCCTTGCATACTGGTGACATTTGAGAAGGAGCAGATTGTGGCGTG GAGAGGAACAGACTACAAGCCTCCAGAAGATGGATATCTATATACCGATAGGGAATTCTTCGATGATCCCGAGGGAGACGGGGCTTTTGCTGAAGATGAA CATAGCTGCTCGGACAAGTAG
AA sequence Show only first row Show all	>Lus10041383 pacid=23179870 polypeptide=Lus10041383 locus=Lus10041383.g ID=Lus10041383.BGIv1.0 annot-version=v1.0 MYLRSLVASRNNPPPHLSFTLAFLSRHLCSSSAASSKLRDYYAFDPPSSLSPENRPSYDNPAPPGKKQKERYRPPSSLNQSRKPMHSDLPFDFRYSYSES SQSARPIGLREPKYSPFGPRRLDRKWTGVCAPAVDPKVKSVDAAEDQNLEEERRRRRERIQGEPLTNAERKILVQSCQRNKTKRQINLGRDGFTHNMLND VHNNWRHAEAVRIKCLGVPTVDMKNVCAQLEDKTFGKIIHRHGGQLVLYRGRNYNPKKRLRVPLMLWTPREPVYPKLIKTTIEGLSIDETKEMRKKGLAV PALTRLAKNGYYGSLVPMVRDAFIVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVAWRGTDYKPPEDGYLYTDREFFDDPEGDGAFAEDE HSCSDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	0	1
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	2.0	0.7884
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	2.4	0.7695
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	7.9	0.7416
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	8.4	0.7373
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	9.8	0.7405
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	10.4	0.7076
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	13.3	0.6985
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	14.5	0.7355
AT1G08530			unknown protein		Lus10021985 [exp]	18.0	0.7237
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	22.6	0.7289

Compare expression of checked genes

Lus10041383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.