Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45670 610 / 0 calcineurin B subunit-related (.1.2) AT1G80950 119 / 2e-29 Phospholipid/glycerol acyltransferase family protein (.1) AT5G60620 51 / 1e-06 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT5G17470 45 / 2e-05 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036544 [exp] 948 / 0 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 773 / 0 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10015853 [exp] 771 / 0 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10003950 [exp] 116 / 4e-28 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 96 / 4e-21 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10014443 [exp] 53 / 5e-07 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10023947 [exp] 52 / 5e-07 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10009176 [exp] 42 / 0.0004 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151800 [exp] 697 / 0 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G074300 [exp] 694 / 0 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 132 / 1e-33 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 115 / 1e-27 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.009G143200 [exp] 51 / 1e-06 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G183300 [exp] 48 / 1e-05 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.009G102500 [exp] 42 / 0.0003 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.016G066700 [exp] 44 / 0.0004 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.010G080900 [exp] 41 / 0.0005 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041384 pacid=23179948 polypeptide=Lus10041384 locus=Lus10041384.g ID=Lus10041384.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTCGCCGCCGATGACCTCTCCTCCCCTCTTCTCGCCTCCCCTCCTCCTCCTCCTCCACACATAATCATCTCCGTTGACGGCGGCGACCACG ACAACAACAAATCCTCCCCCTCCCCTGGTCAACCATACTCCAATGGTCATCACCATAATCACCAGATTCCTCAATCTAACAACAACAACCCTTTCGAATT CCTCGGAATTGACCGCCACGTGGATTCCTCCTTGTCCGTCCCTCCGCCTTCGACTGTCGATCCATTCCGCAACGGAACTCCCCGAATCGACGGAATCTAC GAGGCACTTAAGATCCTGCTGCTACTCCCGATCATACTCCTCAGGTTGCTGCTCTTCGGACTCTGTTTGGCCGTCGGATATCTCGCTACTAAGCTCGCCA TCCACGGATGGAAAGACAAAGAGAATCCTATGCCCCGATGGCGATCTCGCCTCATGTGGATCACTAGGTTTTCTGCTCGCGGGATTCTCTTCTCCTTTGG CTACCAGTGGATTCGAAGAAAAGGGAAGCCTGCCCCAAGGGAGATCGCCCCTATCGTTGTATCTAACCATGTGTCGTATATTGAGCCCATTTTTTACTTC TATGAGATGTGCCCCACCATTGTTGCATCCGAATCACATGATGCTTTGCCCTTTGTTGGAACTATCATCAGAGCTATGCAGGTTATATATGTAAATAGAT TCTCACAACCATCAAGGAAGAATGCTGTCAATGAGATAAAGAGAAAAGGTGCTTGCGATAGATTTCCGCGAGTACTGTTGTTTCCTGAGGGAACCACTTC CAATGGAAGAGTTCTTCTGTCGTTTCAACTTGGTGCGTTCCTCCCTAATTATGCGATCCAACCTGTGGTCGTTCGGTATCCACATGTGCATTTTGACCAA TCTTGGGGAAATATTTCATTAGCATTGCTTATGTTCAGAATGTTCAGCCAGTTTCACAATTACCTCGAGGTGGAGTATCTACCGATTGTTTCCCCCCTTG ACAATTGCAAAGAAAATCCTGCACATTTTTCTAAGAGAGAGAATCCGCAAAGTTTTATGGTTGAAATGGCAAAGGTGGAATCGTTATTCCACATTCGCAG TTTGGAAGCTATGGATTTTCTTGAAAAGTTTCTTTCTATGAATCCAGACTCCAGCGGTCGTGTTAAGTTCTATGATTTTTTGAGGGCTCATAGACTCAGA CCTTGCACACTTTCAGAAGAGGTATTTGCATTCCTCGATGTAGAAAAGAGTGGTTCAATTACATTCAAGCAGTTCTTGTATGGATCATTGCATGTCATGA AACAACCGCAATTCCGGCAAACGTGTGAACTAGCTTTTAGTGAATGTGATGTTAGGGGAGACCATGAAATCTCAGAACACGAGTTCGGAGATGTCATCAG ACTAACAATTCCAGATTTAGACAAAGATGAGGTTCATGAATTGTTCAAGTTGTTTGACGTGGATGCGAAAGGTACGGTGAGCACGGATGACTTCAACTCC TTCTTGCGAAGGAACCCGTTGCTCGTAGCTCTATTTTCGGAGTGTTTGGCTCGTAGAGATACCACAGAGGATTCTGATTCAATGCTGGAAGAGTTTGTGT GA
AA sequence Show only first row Show all	>Lus10041384 pacid=23179948 polypeptide=Lus10041384 locus=Lus10041384.g ID=Lus10041384.BGIv1.0 annot-version=v1.0 MAAVAADDLSSPLLASPPPPPPHIIISVDGGDHDNNKSSPSPGQPYSNGHHHNHQIPQSNNNNPFEFLGIDRHVDSSLSVPPPSTVDPFRNGTPRIDGIY EALKILLLLPIILLRLLLFGLCLAVGYLATKLAIHGWKDKENPMPRWRSRLMWITRFSARGILFSFGYQWIRRKGKPAPREIAPIVVSNHVSYIEPIFYF YEMCPTIVASESHDALPFVGTIIRAMQVIYVNRFSQPSRKNAVNEIKRKGACDRFPRVLLFPEGTTSNGRVLLSFQLGAFLPNYAIQPVVVRYPHVHFDQ SWGNISLALLMFRMFSQFHNYLEVEYLPIVSPLDNCKENPAHFSKRENPQSFMVEMAKVESLFHIRSLEAMDFLEKFLSMNPDSSGRVKFYDFLRAHRLR PCTLSEEVFAFLDVEKSGSITFKQFLYGSLHVMKQPQFRQTCELAFSECDVRGDHEISEHEFGDVIRLTIPDLDKDEVHELFKLFDVDAKGTVSTDDFNS FLRRNPLLVALFSECLARRDTTEDSDSMLEEFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	0	1
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	1.7	0.9444
AT1G52140			unknown protein		Lus10006040 [exp]	3.2	0.9445
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	3.9	0.9466
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10027688 [exp]	4.5	0.9403
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	4.5	0.9295
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	7.2	0.9111
AT4G31860			Protein phosphatase 2C family ...		Lus10003423 [exp]	7.6	0.9092
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	9.5	0.9401
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	9.8	0.9376
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	10.6	0.9373

Compare expression of checked genes

Lus10041384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.