Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45660 111 / 1e-30 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G62165 92 / 4e-23 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G22950 70 / 6e-15 MADS AGL19 AGAMOUS-like 19 (.1) AT5G51860 68 / 3e-14 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT5G51870 67 / 4e-14 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT4G11880 60 / 4e-11 MADS AGL14 AGAMOUS-like 14 (.1) AT3G58780 54 / 4e-09 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 54 / 6e-09 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 51 / 7e-08 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G42830 51 / 8e-08 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036542 [exp] 227 / 8e-77 AT2G45660 137 / 6e-41 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10006715 [exp] 76 / 1e-16 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 66 / 4e-13 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10005302 [exp] 56 / 2e-09 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 56 / 2e-09 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10028215 [exp] 52 / 8e-09 AT3G57230 164 / 4e-52 AGAMOUS-like 16 (.1.2) Lus10009481 [exp] 48 / 1e-06 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10031665 [exp] 47 / 1e-06 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10007100 [exp] 45 / 7e-06 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074200 [exp] 126 / 2e-36 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.002G151700 [exp] 124 / 6e-36 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.001G112400 [exp] 89 / 5e-22 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.012G133000 [exp] 87 / 2e-21 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.003G119700 [exp] 87 / 2e-21 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.004G064300 [exp] 54 / 6e-09 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 53 / 1e-08 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G284600 [exp] 52 / 2e-08 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 52 / 2e-08 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.013G104900 [exp] 52 / 2e-08 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10041385 pacid=23180001 polypeptide=Lus10041385 locus=Lus10041385.g ID=Lus10041385.BGIv1.0 annot-version=v1.0 ATGCAGAGCACAATTGAACGTTACAGGAAGCATGTTAAAGACAGTCCAAAACCCAGGCAGCCTTCCGAACAAAACATGCAGATATTGAAGGAGGAAGCAG CAACTATGATGAAGAAGATACAGGTTCTTGAACTCTCGAAAAGGAGGCTAATGGGAGAAGATCTTGGATCATGCACTTTAGAAGACCTACAGCAGATTGA GCAACAGTTGGAGAGCAGTGTTTGTGTGGTTCGAGCCAGAAAGAATCAAGTGTTCAGGGAACAAATTGAGAAGCTGAAAGAAAAGGGAAGAGAATTGGTG GCTGAGAATGAGAAGCTGTCCAGAAAGTGTGAGATGGAGCAAATGTCGGAAGAACGACAGGAGGAGCAGCAGCAGCAGCAGCAGAAGGGCAACGAGGAGG ACAATGATGACGACGAGCAGCAATGGCATCAGAATGAAAATTCAGGAGGTGGAGGGTATGAAGAAGGAAGTCCAGTTTCAGATGTGGAGACTGAACTCTT CATTGGACTCCCAATTACCAAGCGCTTGCTTCCTAGGAATTGA
AA sequence Show only first row Show all	>Lus10041385 pacid=23180001 polypeptide=Lus10041385 locus=Lus10041385.g ID=Lus10041385.BGIv1.0 annot-version=v1.0 MQSTIERYRKHVKDSPKPRQPSEQNMQILKEEAATMMKKIQVLELSKRRLMGEDLGSCTLEDLQQIEQQLESSVCVVRARKNQVFREQIEKLKEKGRELV AENEKLSRKCEMEQMSEERQEEQQQQQQKGNEEDNDDDEQQWHQNENSGGGGYEEGSPVSDVETELFIGLPITKRLLPRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	0	1
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	1.0	0.9358
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	2.0	0.9086
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	3.0	0.8960
AT4G13150			unknown protein		Lus10038175 [exp]	7.4	0.8500
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	7.5	0.8217
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	9.4	0.8377
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	10.2	0.8610
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	10.2	0.8231
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	11.5	0.8239
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	12.8	0.8257

Compare expression of checked genes

Lus10041385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.