Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02020 278 / 5e-81 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT2G23380 222 / 6e-61 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT1G02580 161 / 3e-41 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT5G42400 64 / 4e-10 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT4G27910 62 / 1e-09 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 62 / 2e-09 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT4G30860 61 / 2e-09 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G05830 61 / 4e-09 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G53430 61 / 4e-09 SET29, ATX5, SDG29 SET domain group 29 (.1) AT1G76710 59 / 1e-08 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009369 [exp] 257 / 2e-73 AT2G23380 804 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10019336 [exp] 234 / 6e-65 AT2G23380 905 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10019026 [exp] 64 / 5e-10 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10025172 [exp] 64 / 7e-10 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 62 / 2e-09 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10026725 [exp] 61 / 3e-09 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 61 / 4e-09 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10016600 [exp] 59 / 7e-09 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10005007 [exp] 59 / 1e-08 AT4G27910 611 / 0.0 SET domain protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120100 [exp] 674 / 0 AT4G02020 877 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G195700 [exp] 673 / 0 AT4G02020 883 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.005G140200 [exp] 230 / 2e-63 AT2G23380 1042 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.007G045800 [exp] 228 / 8e-63 AT2G23380 1063 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.005G260100 [exp] 63 / 7e-10 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G232800 [exp] 63 / 9e-10 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 62 / 1e-09 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 62 / 1e-09 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 61 / 3e-09 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.014G098400 [exp] 61 / 4e-09 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10041386 pacid=23179528 polypeptide=Lus10041386 locus=Lus10041386.g ID=Lus10041386.BGIv1.0 annot-version=v1.0 ATGGAGCTCAGTCTTCCTTTAGCTATGGAGTCCAAGTCAAGCGACTCAGCATCCACGTTTCAAGAAGAGGAATTTGGTGGTGGTACTGGCAACCTCAGGC ATAATTTGAATCAGCTGGTGAAGGAAATTCAAGACGAAAGAGTTGTCTCTGTGAAAGAGAAAATGGAGAAGAACCAGAAGAAACTGGAGAAGGATATGTC TAAGCTTGTATTAGCAACGTCATCATACGCAGGGATGCAAGGAGTTTCCGGAGCAATCTCGACGAGAATTAAAGATCCACTGTATGTACACAGTGGATTC GTTCAAGGAGCAGGAGATAGAGAGAACTGTATTGGTCAGGAAAATCTTCAGTGGACAAACACGAAGCTTCCTTATGTTGAGAAGATACCAAAGTATACTA GTTGGATATATCTACACAGGAATCAGAAAATGACTGAAGACCAATCCGTCGTTGGGAGAAGGCGAATATATTATGAACAGAATGATGGCGAGGCACTCAT CTGTAGCGACAGCGAGGAAGAGACTGCAGATCCTGAGGAAGAGAAACATGAATTCACAGAGGGCGAAGATCGTGTTATATGGACTGCCTTTCAGGAAGGT GGATTGCTAGACAGTGTCGTCGGCCTCGTTAGCCAGATTATTGGAGTCGGCGCTATGGAGATCAGGGACAGATGTAGCTTTCTCAATGAGAAGTTTGCGA GGGACCAGAATCTGAAGAATGTTAGGGATCCTGGACATGCTAGGGGCATCAACTTGGAGAAGAGCCTTAGTGCTGCTCTGGATTCTTTTGATAACCTTTT CTGTCGTCGTTGCCTGGTATTTGATTGCCGTCTGCATGGCTGTTCTCAAACTTTGATTACTCCAAATGAAAGGCAATCATATTTTCCGGCGAATGAAGAT GACAAAAAACCTTGTGGCGATCAATGTTACCTTCAGCTAAGACTTGAAGACTTTCCTGAACATGGGACGAAAAATAGAGAGGAAAGAGGAAAGAGCCTAA TCACCTTAGGTGATGGGCTTCCAGGTGATACCGATGGCGGTGCAGGACTTGAGGAAAGTCAAAGTTCTATGTATGAAAAAGGGACACTTGTTCCTTCAGA AGCTACTTGTGATCCAGAAACCAATCCCAAAACTCGGCATACAGATGTATCTGATATAGATGAAGGCATAGAAGACACTCAGAAGCTGAAGCGCAAAGCT ACGCCTCAGACTTATATAGAAGCAGCCACATCAAAGCAGGCTGCTTTCGATTTTCATGATTCTTCATGCAAGAAGCAGAAAGAATCATTTTCCGGGGACG TAATTTCAGGGAGAGAAAGTGTTCCTACTGTCGATCTTGGTTCTAGTACTAAAACTGCAACTGATATGATTAATGATAATTCACCCTTTGAATGTACATT GAAAGAGGGCTTTTCTACTGGTTCTGAGAAAATTACTGGAGCTGGGCATAAAAAAGTGACAAACATTCTGGAAAGGGATCATTCAATCTCACCATTAAAG TGCACTAGTACGACTGAGGTAGATGTTGGACTTAAGCATGAGAAAGTCAACGACGTGCCAAGGATTCAGGCAATGTCACCAGGAAAGAGCACTGTATGGA GAACTCTTGAAAAAGATCTATACTTGAAAGGAGTTGAGATGTTTGGCAAAAACAGTTGCCTTATAGCAAGAAACTTGCTCTCTGGTTTCAAGACTTGCAT AGAGGTGTACAAATACATGCGTGATAGTGGTGCTACAGTGAATAACAGATCTCTTGCACGAAGTTCATCTTCAGAAGATAACGGGGTAACTGACGCAGAT TATATGGAGATGCCGGCAAGAACACGAATCTTCCGCCGGAAAGGCAGAACTCGTAGGTTAAAATATTCATGGAAGTCTTCTGGCCATCCATCATCAATGC GGAAAAGAATTGCTGATAGCAAAGACCAGTCATGTGCTCAAAAAGCTGCAAAAATCGGTTCAGAGGATGCCATTGTGCAAAAAGCCAGTGTAGAAGTCGA CAATGTCCATGCTTCGCAGCAGGTCGTGAATGTGATCCAGATGTCTGCCGCAATTGCTGGTTGTGGAGATGGTTCGTTGGGAGAGCCACCGAAACGAGGG GATGGTCAGTGTGGAAACATGAGGCTACTTCTCAGGCAACAACAAAGGATTATCTTGGCAAAGTCGGATGTGGCTGGATGGGGAGCCTTCCTAAAGTTTG TCCTAGACGCGTACCGCAAAGGAGATAAGCTGAAGTTTGCGAACCATTCGTTGGATCCGAATTGCTATGCTAAGGTAATGCTGGTGGCTGGAGATCACCG AGTGGGGATTTTCGCGAAAGAGAACATCAACGCGAGCGAGGAGCTGTTCTATGATTATCGTTACGGACCTGACCAGGCACCGGAATGGGCTAGGAAACCA GAAGGGGAAAGTTCAAGTGCAGCCTCCCAAGGCAGGGCAAAGAAGCACCAATCCAGTTGA
AA sequence Show only first row Show all	>Lus10041386 pacid=23179528 polypeptide=Lus10041386 locus=Lus10041386.g ID=Lus10041386.BGIv1.0 annot-version=v1.0 MELSLPLAMESKSSDSASTFQEEEFGGGTGNLRHNLNQLVKEIQDERVVSVKEKMEKNQKKLEKDMSKLVLATSSYAGMQGVSGAISTRIKDPLYVHSGF VQGAGDRENCIGQENLQWTNTKLPYVEKIPKYTSWIYLHRNQKMTEDQSVVGRRRIYYEQNDGEALICSDSEEETADPEEEKHEFTEGEDRVIWTAFQEG GLLDSVVGLVSQIIGVGAMEIRDRCSFLNEKFARDQNLKNVRDPGHARGINLEKSLSAALDSFDNLFCRRCLVFDCRLHGCSQTLITPNERQSYFPANED DKKPCGDQCYLQLRLEDFPEHGTKNREERGKSLITLGDGLPGDTDGGAGLEESQSSMYEKGTLVPSEATCDPETNPKTRHTDVSDIDEGIEDTQKLKRKA TPQTYIEAATSKQAAFDFHDSSCKKQKESFSGDVISGRESVPTVDLGSSTKTATDMINDNSPFECTLKEGFSTGSEKITGAGHKKVTNILERDHSISPLK CTSTTEVDVGLKHEKVNDVPRIQAMSPGKSTVWRTLEKDLYLKGVEMFGKNSCLIARNLLSGFKTCIEVYKYMRDSGATVNNRSLARSSSSEDNGVTDAD YMEMPARTRIFRRKGRTRRLKYSWKSSGHPSSMRKRIADSKDQSCAQKAAKIGSEDAIVQKASVEVDNVHASQQVVNVIQMSAAIAGCGDGSLGEPPKRG DGQCGNMRLLLRQQQRIILAKSDVAGWGAFLKFVLDAYRKGDKLKFANHSLDPNCYAKVMLVAGDHRVGIFAKENINASEELFYDYRYGPDQAPEWARKP EGESSSAASQGRAKKHQSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	1.0	0.9059
AT5G02930			F-box/RNI-like superfamily pro...		Lus10024702 [exp]	2.0	0.8921
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	2.0	0.9018
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	2.4	0.8923
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024112 [exp]	2.4	0.8883
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	3.2	0.8889
AT3G30841			Cofactor-independent phosphogl...		Lus10003060 [exp]	6.6	0.8304
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	6.7	0.8643
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	7.3	0.8451
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	7.3	0.8603

Compare expression of checked genes

Lus10041386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.