Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02030 1003 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036541 [exp] 441 / 3e-147 AT4G02030 284 / 3e-87 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G196300 [exp] 1083 / 0 AT4G02030 1020 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2) Potri.014G120900 [exp] 1049 / 0 AT4G02030 1004 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10041387 pacid=23179630 polypeptide=Lus10041387 locus=Lus10041387.g ID=Lus10041387.BGIv1.0 annot-version=v1.0 ATGGCGATGGAGGACGTGCCCTTGGACGATAAGGCGAAGCGAATGAGAGATCTATTGTCGAGTTTCTACGCTCCAGCGGATCCTTCAATGTCCACCGATA GTGTCCCCAGAGGTGGTTCCTTAGACGCCATCAACACAACTTCATTTGATGCAGATCAGTACATGAATCTCTTGGTGCAAAGGTCCAACTTAGAAGGGCT TCTGCAAAGGCATGTTGAAATGGCAGCTGAAATAAAGAATCTGGACACTGATCTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCTACT GATGCAATTAAGAGGATGAAGAGCAACATTGTGGGCATGGAAGTAAACATGGAGCAGCTCCTTAATAAGATCATGTCAGTGCAATCAAGGAGTGATGGAG TTAACACTTCTCTTTTCGAAAAGAGAGAGCATATAGAGAAATTGCATCGCACTCGCAACCTCCTTCGCAAAGTGCAGTTCATATATGATCTACCTGCCAG ACTTGGGAAGTGTATTAAAACAGAGGCCTATGCTGATGCCGTCAGGTTCTATACTGGGGCCATGCCTATTCTTAAGGCATATGGGGAATCATCCTTCCTG GACTGTAAGCGAGCATCTGAAGAAGCTGTGGCAACAATTACAAAAAACTTACAGGGGAAGCTATTCTCAGACTCTGAATCTATACAGACAAGGGCTGAAG CAGCAGTTCTTTTGAAACAGTTGGCTTTTCCGGTGGATGGTTTGAAGGCAAAACTATTCGAGAAGTTGGAACAATCTCTTGAGGATCTTCAGCTTAACTA TGGAGAAATATCTGCTGCATTGAAAGAGTCTAATGAACCTGAAAACAATCTTCAGATGCCTTTTGCAGGAGCACATGACGCTTCTGTTCGTGGGTTTGTG GAAGCTGTTAGCGCGTATCGAGTAATATTTCCTGACTCGGAATCTCAACTGATTAAACTTTCTGAGCAGTTGATAACAATGCACTTTCTATCAACTGAGG AATACACAAAGAAGAGAGTTTCGATTCCAACTTTTTTGTGTGTACTTCGAATAATATGGGGAGATGTCCTCCTGATTGATGAAATATTGCCGGAGGCTTT GCTACATGATTACTGTTTCAAGGTATCCCAGAGCGCTATCAAACAGTATGTTTCAAGCATGTTTTCTCATCTTCTAAATGATGTCTCAGATGCTCTGACA AATGTCCATGTCACTAAAAAGGAGGCGCCAGAAGAAAATCCATTGCAGGTTGCTATGGAAGCTGGCAAAAGTTCATTGCTCAAAGGAAGCATGGATGTTT TACTGGGCTTCCGTCAACTTCTGGATGACAACTTAGATCTGCTAGTCAAACAAAGGGAACTGATGGTTGACTGGATTGAAGAAGGTTTTCAACAGTTCTT TGAGGCATTGGATAGTCAGTTTCTTTTGCTTTCCGGAAAAAATAAATCCAGCCCTCAAGAATACAGTCCACGAGAGGGGTTACAAGCTGAAAAAGTGCTT TCTGGTCTTGTCTTGGTTTTGGCTCAGCTTTCTGTTTTTATGGAACAAACAGCAATCCCTAGAATTGCAGAGGCAAGAGAAATAGCTGCTTCTTTTCCTG GTGGTGGTGCTCGGCGATATGAACATGGACCGGTGTTTCTTCCTCCTGAATTTAGTCGAGTCTTTCGGTCAAGCAGTGAGAAGTTTCTGCACCATTATAT AAATATGAGGACGCATCGAATATCAGTTCTCTTAAGGAAAAGGTTCACCACTCCAAATTGGATCAAGCACAAGGAGCCACGGGAGGTTCACATGTTCGTT GATCTATTCCTTCAGGAGTTGGAAGGAGTAGGAACCGAAGTTAAACAAATTCTCTCTCAAGGAGTCCGAAAGCATCGTCGATCTGAGAGCAATGGAAGCA CTACCTCCTCTCTCAGCAATTCATTAAGAGACGATAAACTAAAAAGGTCAAGTACACAAAGAGCAAGGAGCCAGCTTTTGGAAACCCACCTAGCAAAATT GTTCAAGCAGAAAGTAGAAATTTTTACCAAAGTCGAGTTTACGCAGGAGTCAGTTTTGACTACCATCGTAAAACTCGGCCTCAAAAGCTTGCAAGAATTT GTTCGACTTCAGACTTTAAATCGCAGTGGATTTCAGCAGATTCAGTTGGATATTCAGTTTCTAAGGACTCCTCTCAAGGAACTAGCTGAAGACGAAGCTG CAATCGACTTTTTGCTTGATGAGGTGATCGTCGGTGCTTCAGATCGTTGCCTCGACCCAACTCCATTGGAACCGCCTATTTTACACAAACTGATACAAGC AAAGATGGCCGGATCAAAGGATCAAAGTTCCAGTTCTTCCTAA
AA sequence Show only first row Show all	>Lus10041387 pacid=23179630 polypeptide=Lus10041387 locus=Lus10041387.g ID=Lus10041387.BGIv1.0 annot-version=v1.0 MAMEDVPLDDKAKRMRDLLSSFYAPADPSMSTDSVPRGGSLDAINTTSFDADQYMNLLVQRSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISAT DAIKRMKSNIVGMEVNMEQLLNKIMSVQSRSDGVNTSLFEKREHIEKLHRTRNLLRKVQFIYDLPARLGKCIKTEAYADAVRFYTGAMPILKAYGESSFL DCKRASEEAVATITKNLQGKLFSDSESIQTRAEAAVLLKQLAFPVDGLKAKLFEKLEQSLEDLQLNYGEISAALKESNEPENNLQMPFAGAHDASVRGFV EAVSAYRVIFPDSESQLIKLSEQLITMHFLSTEEYTKKRVSIPTFLCVLRIIWGDVLLIDEILPEALLHDYCFKVSQSAIKQYVSSMFSHLLNDVSDALT NVHVTKKEAPEENPLQVAMEAGKSSLLKGSMDVLLGFRQLLDDNLDLLVKQRELMVDWIEEGFQQFFEALDSQFLLLSGKNKSSPQEYSPREGLQAEKVL SGLVLVLAQLSVFMEQTAIPRIAEAREIAASFPGGGARRYEHGPVFLPPEFSRVFRSSSEKFLHHYINMRTHRISVLLRKRFTTPNWIKHKEPREVHMFV DLFLQELEGVGTEVKQILSQGVRKHRRSESNGSTTSSLSNSLRDDKLKRSSTQRARSQLLETHLAKLFKQKVEIFTKVEFTQESVLTTIVKLGLKSLQEF VRLQTLNRSGFQQIQLDIQFLRTPLKELAEDEAAIDFLLDEVIVGASDRCLDPTPLEPPILHKLIQAKMAGSKDQSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	0	1
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	1.0	0.9074
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	3.5	0.8869
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	3.9	0.8817
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	4.7	0.8903
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	5.3	0.8537
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	5.5	0.8767
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	6.2	0.8574
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10039250 [exp]	6.9	0.8599
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	7.5	0.8848
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	9.2	0.8337

Compare expression of checked genes

Lus10041387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.