Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45640 168 / 4e-54 ATSAP18, HDA19 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036540 [exp] 221 / 1e-68 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151500 [exp] 206 / 5e-69 AT2G45640 185 / 3e-61 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2) Potri.014G074000 [exp] 185 / 4e-61 AT2G45640 163 / 1e-52 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2) Potri.003G119300 [exp] 181 / 3e-59 AT2G45640 182 / 1e-59 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF06487 [flax] [poplar] SAP18 Sin3 associated polypeptide p18 (SAP18)
Representative CDS sequence Show only first row Show all	>Lus10041388 pacid=23179579 polypeptide=Lus10041388 locus=Lus10041388.g ID=Lus10041388.BGIv1.0 annot-version=v1.0 ATGGCGGGAATGGCAGAACCACCGAGGAGACAAGGAGGGAGACCGATGCCGCCTCCTGGTAATAGGGGACCTCCGATTTCCCGAGGCCCGCCTCCTCTTC CTCCCGTCGATCGCGAGAAGACATGTCCTCTGCTGCTTCGGGTATTCACCAAGATTGGAGGTCATCACGGGAAAGAAGAATTCCAAGTTAGGGGCAAGGA GCCCAAGGATGAGGTTCAAATCTATACATGGAAGGATGCAACTCTCCGTGAATTGACTGACTTGCTTTCACTTCAATTTGAACATTTGCTCTTAGATTCT ATCAGGGTCAAAGAAGTGGCTCCAGCAGCAAGGAGAAGAGATGCACTACTGTCATTTGCTTTTGCCTATCCAGATAAGAATGGCCGTTTTGTGGTGCGAG AGGTTGGGAAGACTTACTCTAACCGGATCGGGAAGTTAGATGATAACAAGGCGTTGGCTGAAATTGGCTTCCAGATTGGAGATTATCTGGATGTGGCAAT TATGTAA
AA sequence Show only first row Show all	>Lus10041388 pacid=23179579 polypeptide=Lus10041388 locus=Lus10041388.g ID=Lus10041388.BGIv1.0 annot-version=v1.0 MAGMAEPPRRQGGRPMPPPGNRGPPISRGPPPLPPVDREKTCPLLLRVFTKIGGHHGKEEFQVRGKEPKDEVQIYTWKDATLRELTDLLSLQFEHLLLDS IRVKEVAPAARRRDALLSFAFAYPDKNGRFVVREVGKTYSNRIGKLDDNKALAEIGFQIGDYLDVAIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Lus10041388 [exp]	0	1
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	5.7	0.8430
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	8.5	0.8528
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	9.5	0.8321
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10011773 [exp]	9.8	0.8565
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	13.0	0.8428
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10007591 [exp]	13.0	0.8043
AT3G02080			Ribosomal protein S19e family ...		Lus10032992 [exp]	16.3	0.8557
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10038496 [exp]	30.8	0.8007
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	33.6	0.8169
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	36.1	0.8357

Compare expression of checked genes

Lus10041388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.