Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61130 964 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 686 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT5G47780 629 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT2G46480 604 / 0 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 469 / 2e-159 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 450 / 3e-152 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 441 / 5e-149 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G02350 426 / 8e-143 GAUT9 galacturonosyltransferase 9 (.1) AT2G30575 419 / 2e-139 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 407 / 4e-135 GAUT6 galacturonosyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036540 [exp] 1206 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 1065 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 712 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 681 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038739 [exp] 625 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10011834 [exp] 470 / 7e-160 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10007979 [exp] 460 / 4e-156 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 459 / 9e-156 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 455 / 2e-154 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G073800 [exp] 1037 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 1029 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 692 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 630 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 592 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 470 / 6e-160 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.019G108900 [exp] 462 / 4e-157 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 453 / 1e-153 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.015G060800 [exp] 452 / 2e-153 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.004G111000 [exp] 452 / 8e-153 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10041389 pacid=23179776 polypeptide=Lus10041389 locus=Lus10041389.g ID=Lus10041389.BGIv1.0 annot-version=v1.0 ATGTGTTGTCTGTTTCAGGACCTGGATTGGAGAGAACGGCTCGCATTACAACACGTTAAATCCCTTTTCACGAAGGATGTCATTGATGTGATCACCGCTA ATACGGCTGACTTGGGGCCTTTTAGTCTTGATGCTTTTAGAAGAAGCAATTTGTCTGCTTCATGGACTCTTGTTGGAGCTGAAACTTCAGTTAGCAATTC ATCTATTTCGGAGGTAAAGCAGAAACACTCAGCAACTATTATCAAGTCAGAAACTTCGAAGAGTAAACATAGCAAGCTGTCTGATGATGAGGCTCAATTC ATTGTCTCGCCTGAAAAACTTAGTCGGAGGCAACTAAGAGAAAAAAGACGTGAGAGGCGTGCAGCTGACTTGGTCCGGCATGGAGATGAAGCAACTATAA AACTCGAAAATGCAGCTATTGAACGATCTAAATCAGTTGACTCTGCAGTTCTGGGTAAATACAATATATGGCGCAAAGAGATTGACAATGAGAATGCTGA TTCAACCGTACGCTTAATTCGAGATCAGATGATAATGGCCAGGGTATATATGAGTATTGCAAAGATGAAGAACAAGCTTGATTTGCAACAGGAGCTACAA ACTCGACTAAAGGAGAGCCAGCGCGCCATAGGTGATGCAACAGCTGACTTTGAACTACAACAGAGTGCTGCGGAGAAAATTAAGATCATGGGTCAAGTTC TGTCGAAAGCTAGGGAAAAATTATACGACTGTAAGATGGTCACTGCCAATCTCAGAGCAATGCTCCAGACAGCTGACGAGCAAGTTAGGAGCTTGAAAAA GCAGAGCACATTTCTGAGTCAATTGGCTGCTAAAACGATTCCTAATGGAATTCATTGCTTGTCTATGCGCCTAACAATAGACTACTATCTCCTTCCTCCA GAGAAGAGAAAGTTCCCGCAAAGTGAGAATCTGGAAAATCCAAATTTGCATCACTACGCCCTCTTCTCCGACAATGTGTTGGCAGCTTCAGTTGTTGTCA ATTCAACTATTATGAATGCAAAGGATCCTTCCAAACATGTATTTCACCTTGTTGCTGATAAATTAAATTTTGGAGCAATGAATATGTGGTTTTTATTGAA CCCTCCTGGAAACGCGACTATCCATGTTGAAAATGTAGATGAGTTTAAGTGGCTTAACTCATCTTACTGCCCTGTACTCCGTCAGCTGGAATCATCTGCA ATGAAAGAGTATTACTTCAAGGCAAATCATCCTACATCTCTTTCAGCTGGTGCATCGAATCTGAAGTACCGAAATCCCAAGTATCTTTCAATGCTCAATC ACCTAAGGTTTTATCTGCCAGAGGTTTACCCGAAATTGGACAAGATCCTTTTTCTCGACGATGACATTGTTGTCCAGAAGGATCTGACTGGACTGTGGTC TGTAGATCTGCATGGAAAAGTGAATGGCGCGGTCGAAACTTGTGGCGAAAGCTTTCACCGGTTCGATAAGTACCTTAACTTTTCGAATCCTCATATTGCT AGAAACTTTGATCCAAATGCTTGTGGTTGGGCATATGGTATGAACATGTTTGATCTTCAAGAATGGAAAAGGAAGGATATCACAGGCATATATCATAAGT GGCAAACCATGAATGAAGATAGGGTACTTTGGAAGCTTGGGACACTGCCTCCGGGGTTGATAACATTTTACGGCCTGACACATCCTCTCGAGAAGTCGTG GCATGTGCTCGGTCTAGGTTACAATCCCAGCGTCGATAAAGGGGAGATTGAGCGAGCTGCGGTTGTTCACTATAATGGCAACATGAAACCATGGCTCGAG TTGGCAATGACAAAGTACAGACCGTATTGGACAAAGTATATCAAATATGATCATCCTTATCTCCGCAATTGCCGTCTCACTAATTGA
AA sequence Show only first row Show all	>Lus10041389 pacid=23179776 polypeptide=Lus10041389 locus=Lus10041389.g ID=Lus10041389.BGIv1.0 annot-version=v1.0 MCCLFQDLDWRERLALQHVKSLFTKDVIDVITANTADLGPFSLDAFRRSNLSASWTLVGAETSVSNSSISEVKQKHSATIIKSETSKSKHSKLSDDEAQF IVSPEKLSRRQLREKRRERRAADLVRHGDEATIKLENAAIERSKSVDSAVLGKYNIWRKEIDNENADSTVRLIRDQMIMARVYMSIAKMKNKLDLQQELQ TRLKESQRAIGDATADFELQQSAAEKIKIMGQVLSKAREKLYDCKMVTANLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPP EKRKFPQSENLENPNLHHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVADKLNFGAMNMWFLLNPPGNATIHVENVDEFKWLNSSYCPVLRQLESSA MKEYYFKANHPTSLSAGASNLKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLTGLWSVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIA RNFDPNACGWAYGMNMFDLQEWKRKDITGIYHKWQTMNEDRVLWKLGTLPPGLITFYGLTHPLEKSWHVLGLGYNPSVDKGEIERAAVVHYNGNMKPWLE LAMTKYRPYWTKYIKYDHPYLRNCRLTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10041389 [exp]	0	1
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10018594 [exp]	5.9	0.8394
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032361 [exp]	10.5	0.8405
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	14.0	0.8697
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	15.1	0.8600
AT5G52882			P-loop containing nucleoside t...		Lus10027550 [exp]	15.9	0.8067
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	20.2	0.8391
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	21.4	0.8467
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10040047 [exp]	32.9	0.7956
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10022759 [exp]	34.3	0.8012
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	35.3	0.8398

Compare expression of checked genes

Lus10041389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.