Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51810 444 / 2e-156 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 440 / 1e-154 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 424 / 4e-148 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G60980 411 / 3e-143 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 317 / 4e-106 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 186 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 168 / 6e-49 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 167 / 8e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 166 / 1e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 166 / 1e-47 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036539 [exp] 704 / 0 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10027399 [exp] 480 / 4e-170 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 470 / 1e-165 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10015016 [exp] 445 / 2e-156 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 444 / 4e-156 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10006350 [exp] 441 / 1e-154 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011476 [exp] 162 / 2e-46 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10011979 [exp] 158 / 8e-45 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10006518 [exp] 156 / 5e-44 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151300 [exp] 513 / 0 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 488 / 3e-173 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G134600 [exp] 483 / 2e-171 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 466 / 7e-165 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.007G103800 [exp] 381 / 3e-131 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 359 / 8e-123 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 347 / 3e-118 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 340 / 7e-116 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.010G023600 [exp] 172 / 4e-50 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 171 / 8e-50 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10041390 pacid=23179623 polypeptide=Lus10041390 locus=Lus10041390.g ID=Lus10041390.BGIv1.0 annot-version=v1.0 ATGTCTCCTCCTCCTTCTATGGCTGATTCAGCCGAGCCATTAGTTTTCGACGCTTCTCTTCTCCAGAACCTGTCCAGCATTCCGCCGCAGTTCGTCTGGC CCCACGACGAGAGGCCCGGAACCGAATCCCCGCCGGTGCTGGCCATCCCGCCGATCGACCTGCGCAGCTTCATGTCCGGCGATCCCACCGCCGTGTCGGC CGCGTCCAAGGCGGTGGACGAGGCGTGCAGGAAGCACGGGTTCTTCCTGGTTGTTAACCACGGAGTGGACGCCGAGCTGGTGTCGGAAGCTCACCGGTGC ATGGACCAGTTCTTCGGAATGAAGATGTCGGAGAAGCAGAGAGCGCAGAGGAAAACAGGGGAGCTCTGTGGCTACGCTAGTAGTTTCACGGGGAGATTCT CGTCCAAACTCCCCTGGAAGGAGACGCTGTCGTTTCGTTACTGCAACGATCGGAACTCGGGCGCCGCCGCCGATGATACTAACATTGTTCGTGATTACCT CTTGAATAAACTGGGAGAAGACTTCGCACACTTTGGGGAGGTGTACGAAGGGTATTGCGAAGCGATGAGCAATTTGTCGTTGGGGATAATGGAGCTATTG GGAGTGAGTCTAGGAGTTGGAGGAGAGCATTTCAGGGAGTTTTACAAAGGGAATGATTCGATAATGAGATTGAATTACTACCCACCTTGCCAAAAGCCAG ACCTAGCACTTGGCACTGGCCCTCATTGCGACCCTACTTCCTTAACTATACTCCATCAGGATCAAGTTGGTGGCCTCGAAGTCTTCGTCGATGGTCGATG GCACTCCGTTTCGCCTCACCCGGGCGCTTTCGTTGTCAACATCGGCGACACTTTCATGGCACTATCGAACGGGGTTTACAGGAGTTGCCTGCACCGGGCG GTGTTGAACCGGGACCAAGTGAGGAAATCCTTAGCATTCTTCTTGTGTCCAAACTCAGAAAAGGTGGTCAAGCCTCCACAGTCGCTGCTCAATAATCCAA GAATGACAAGAGCATACCCAGATTTCACCTGGCCAACGTTGCTGGAGTTCACTCAGAGGAATTACAGGGCCGACATGAAAACCCTCGACGCATTCACGAC ATGGCTCCAAACACAACAAACAACAAAACTGATTACATAA
AA sequence Show only first row Show all	>Lus10041390 pacid=23179623 polypeptide=Lus10041390 locus=Lus10041390.g ID=Lus10041390.BGIv1.0 annot-version=v1.0 MSPPPSMADSAEPLVFDASLLQNLSSIPPQFVWPHDERPGTESPPVLAIPPIDLRSFMSGDPTAVSAASKAVDEACRKHGFFLVVNHGVDAELVSEAHRC MDQFFGMKMSEKQRAQRKTGELCGYASSFTGRFSSKLPWKETLSFRYCNDRNSGAAADDTNIVRDYLLNKLGEDFAHFGEVYEGYCEAMSNLSLGIMELL GVSLGVGGEHFREFYKGNDSIMRLNYYPPCQKPDLALGTGPHCDPTSLTILHQDQVGGLEVFVDGRWHSVSPHPGAFVVNIGDTFMALSNGVYRSCLHRA VLNRDQVRKSLAFFLCPNSEKVVKPPQSLLNNPRMTRAYPDFTWPTLLEFTQRNYRADMKTLDAFTTWLQTQQTTKLIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	1.7	0.9600
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	2.4	0.9487
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	3.9	0.9262
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	4.0	0.9014
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10032446 [exp]	5.5	0.8810
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	7.1	0.8994
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	8.1	0.8972
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	9.0	0.8833
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	9.2	0.8749
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	10.1	0.8644

Compare expression of checked genes

Lus10041390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.