Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45630 150 / 2e-44 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 141 / 7e-41 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 90 / 2e-21 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G28310 61 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14780 46 / 7e-06 FDH formate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036537 [exp] 176 / 2e-54 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 169 / 1e-51 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036536 [exp] 119 / 4e-34 AT2G45630 156 / 1e-48 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 123 / 5e-34 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 120 / 5e-33 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10037552 [exp] 120 / 9e-33 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 104 / 7e-27 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 104 / 7e-27 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 102 / 3e-26 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151100 [exp] 182 / 8e-57 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 159 / 6e-48 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 158 / 5e-47 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 153 / 2e-45 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 145 / 3e-42 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 136 / 5e-39 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 107 / 3e-28 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 104 / 5e-27 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G161300 [exp] 49 / 8e-07 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.013G104200 [exp] 45 / 1e-05 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10041392 pacid=23179863 polypeptide=Lus10041392 locus=Lus10041392.g ID=Lus10041392.BGIv1.0 annot-version=v1.0 ATGACACCGACCGCCGGTTCTACTCCTGAAATGTCCACCTTCCTTCCAACGAATCGGAGAAGAACACTTCACTTCCGACAAGTTCCTTTAGACGATTTCT TAACCACTCACGCCCAATCCGTACGAGCTATCCTTTCCACCGGAAAATTTCCTGTTCCTGCCGACGCCCTTCAACTCCTTCCCAACGTCGAAGCAATTGT GACCACCGGCGCCGGAGTTAACAACCTCGACTTGCCCGAGTGCCGTCGCCGCGGAATCAAGATTGCGGATGCAGGGGACGTCTTCTCTGCCGACGGCGCC GATTACGCTGTTGGGCTGCTCATCGATGTCTTGAGGAAGATCTCCGCCGGCGATCGTCAGGTGAGTAGTAAGCGGATAGGAATAGTGGGGTTAGGCAGAA TCGGTCACCAAGTCGCCAAACGGCTCGAATCCTTCGGCTGCACCATCTCGTACAATTCGAGAACCCCGAAATCATCAACCCTTCCATACGAACATGTTGA GAAATGGGGCAGCAATATCGAGCAAGAACGAAATGAACGAGACACAACGATTTTTACATGGAAAACCCAAACCGGGAAAAACTACGAGATCGTAGTCTGA
AA sequence Show only first row Show all	>Lus10041392 pacid=23179863 polypeptide=Lus10041392 locus=Lus10041392.g ID=Lus10041392.BGIv1.0 annot-version=v1.0 MTPTAGSTPEMSTFLPTNRRRTLHFRQVPLDDFLTTHAQSVRAILSTGKFPVPADALQLLPNVEAIVTTGAGVNNLDLPECRRRGIKIADAGDVFSADGA DYAVGLLIDVLRKISAGDRQVSSKRIGIVGLGRIGHQVAKRLESFGCTISYNSRTPKSSTLPYEHVEKWGSNIEQERNERDTTIFTWKTQTGKNYEIVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041392 [exp]	0	1
AT3G19650			cyclin-related (.1)		Lus10011420 [exp]	1.0	0.8468
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	10.7	0.8218
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	13.4	0.8161
AT5G51010			Rubredoxin-like superfamily pr...		Lus10016735 [exp]	15.1	0.8206
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	22.7	0.8202
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	23.5	0.7848
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10037352 [exp]	29.5	0.8133
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	30.7	0.8164
AT5G52420			unknown protein		Lus10039249 [exp]	31.8	0.7773
AT5G08340			Nucleotidylyl transferase supe...		Lus10007496 [exp]	32.2	0.7484

Compare expression of checked genes

Lus10041392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.