Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45630 392 / 6e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 336 / 3e-115 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 254 / 3e-83 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G72190 103 / 6e-25 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 99 / 2e-23 FDH formate dehydrogenase (.1) AT4G34200 98 / 2e-22 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 96 / 1e-21 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT3G19480 89 / 2e-19 D-3-phosphoglycerate dehydrogenase (.1) AT1G68010 88 / 3e-19 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G28310 0 / 1 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036537 [exp] 624 / 0 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 311 / 2e-105 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 291 / 2e-97 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10037552 [exp] 284 / 8e-95 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 281 / 9e-94 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 280 / 2e-93 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 272 / 5e-90 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 265 / 2e-87 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036536 [exp] 242 / 4e-80 AT2G45630 156 / 1e-48 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151100 [exp] 456 / 3e-162 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 424 / 4e-149 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 409 / 1e-143 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 405 / 2e-142 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 356 / 1e-122 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 342 / 3e-117 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 279 / 7e-93 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 259 / 4e-85 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G022800 [exp] 101 / 1e-23 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.013G104200 [exp] 100 / 1e-23 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10041393 pacid=23179893 polypeptide=Lus10041393 locus=Lus10041393.g ID=Lus10041393.BGIv1.0 annot-version=v1.0 ATGGATTCTCCGGCGGCGCAAGAGGACGATCTCCCCCAGGTCCTGGTTCTGAAGAAGCCGCCGTACTTCTCCGCAACAGAAGGCCATCACTTAATTTCCA CCAAGTTCCTCTACTTGAACGCCTTTGATTCAACCCTCCCGCTTCACGAGTTTCTGACAGCCAACGCCCGGTCAGTACAAGCACTGGTCTCCCCCGGAGG GGCAATCGTAAACGCTGACGTCCTCGATCTTCTCACGGAGCTGCGTGTCATCGTCACCACCAGCGCCGGTCTTAACCAGCTCGACTTACTCGAGTGCCGA CGCCGAGGCATCAAGATCGCCAACGCAGGGGATACATATTCGGCTGACGTTGCTGATTGCGCCGTCGGATTGTTGATCGATGTTTTGCGGAAGATCTCCG CCGGCAATCGGTTCGTCAAGAGCGGGCTCTGGGCCTCTAAAGGAGACTATCCCCTCGGTTCCAAGGTGGGAGGCAAGCGGATCGGAATAGTAGGACTCGG TCGAATCGGCAACCAAATTGCGAAAAGGCTCGAGGCATTCGGTTGCCGCATCTCGTACAACTCCAGGAAGCAAAAGACTAATGCAACTTACCCTTTCTAC GCACAAGTCCCGGACCTTGCTGCAAACTCAGATGCTCTGATCATCTGCTGTGGGTTGACCGATCAAACACGACACATCATCGACAAGCAAGTGATGGCGG CGCTAGGTAAGGAAGGGGTGATCATCAACATTGCGAGGGGGGCAGTTGTCGACGAGCAGGAAATGGTGAGGTGTCTTGTGGAAGGTGAGATTGCGGGTGC TGGACTGGATGTATTGGAGCACGAGCCCGAAGTTCCGAAAATGCTAATGGAGTTGGACAACGTTGTGTTGAGTCCGCATTGTTCTGCTTTCACCACGGAA TCTTTGATGGACATTGCTAGACTTGTGGTGGGGAACCTGGAAGCTTTCTTCTCCAACAAGCCATTGCTGTCAGAGTACAAAATGGATGATTGA
AA sequence Show only first row Show all	>Lus10041393 pacid=23179893 polypeptide=Lus10041393 locus=Lus10041393.g ID=Lus10041393.BGIv1.0 annot-version=v1.0 MDSPAAQEDDLPQVLVLKKPPYFSATEGHHLISTKFLYLNAFDSTLPLHEFLTANARSVQALVSPGGAIVNADVLDLLTELRVIVTTSAGLNQLDLLECR RRGIKIANAGDTYSADVADCAVGLLIDVLRKISAGNRFVKSGLWASKGDYPLGSKVGGKRIGIVGLGRIGNQIAKRLEAFGCRISYNSRKQKTNATYPFY AQVPDLAANSDALIICCGLTDQTRHIIDKQVMAALGKEGVIINIARGAVVDEQEMVRCLVEGEIAGAGLDVLEHEPEVPKMLMELDNVVLSPHCSAFTTE SLMDIARLVVGNLEAFFSNKPLLSEYKMDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	0	1
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	1.4	0.9259
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	3.2	0.8775
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	4.2	0.8908
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	4.2	0.8829
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	5.7	0.8576
AT1G70140		ATFH8	formin 8 (.1)		Lus10042154 [exp]	7.2	0.8109
AT5G35732			unknown protein		Lus10006404 [exp]	8.1	0.8742
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10030422 [exp]	8.3	0.8387
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	10.0	0.8792
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	10.2	0.8538

Compare expression of checked genes

Lus10041393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.