Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45590 548 / 0 Protein kinase superfamily protein (.1) AT5G51770 370 / 4e-119 Protein kinase superfamily protein (.1) AT4G25390 249 / 6e-75 Protein kinase superfamily protein (.1.2) AT1G80870 163 / 2e-42 Protein kinase superfamily protein (.1) AT3G58690 140 / 4e-36 Protein kinase superfamily protein (.1) AT5G11020 140 / 1e-35 Protein kinase superfamily protein (.1) AT1G80640 132 / 9e-34 Protein kinase superfamily protein (.1.2) AT3G09010 133 / 1e-33 Protein kinase superfamily protein (.1) AT4G11470 135 / 3e-33 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT2G25220 131 / 8e-33 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036533 [exp] 687 / 0 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10027393 [exp] 445 / 4e-148 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031678 [exp] 231 / 3e-70 AT2G45590 263 / 6e-83 Protein kinase superfamily protein (.1) Lus10031679 [exp] 207 / 1e-61 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10036534 [exp] 199 / 5e-61 AT2G45590 161 / 1e-47 Protein kinase superfamily protein (.1) Lus10026069 [exp] 156 / 5e-40 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10014361 [exp] 143 / 2e-35 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10033783 [exp] 135 / 5e-33 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10017647 [exp] 131 / 7e-33 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072900 [exp] 666 / 0 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 653 / 0 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.015G134100 [exp] 469 / 4e-157 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 469 / 5e-157 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.003G183100 [exp] 169 / 2e-44 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 162 / 5e-42 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 139 / 9e-36 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 138 / 2e-35 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 136 / 8e-35 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 139 / 5e-34 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041395 pacid=23179738 polypeptide=Lus10041395 locus=Lus10041395.g ID=Lus10041395.BGIv1.0 annot-version=v1.0 ATGCCATCCCGCCGTCTCCTCTCTCTTCCTCCGCCGGAGCATCACCACCGCACACACCACAACACCCACCTCCCTGCAATCCTTGCCGGATCATTGGCTT TCGCTCTCATCTCCCTCCTTTTTCTATTCGTCTTCCTATACCGTAAGCTGTCCCGCCACCGCACCGCCCCGACTTCTTCTTCTTCAGACCTCAAATCCCC CACTCATCTCCAAACCACCAACCAATGCCGTCACTTCTCGTACTCTCTCCTCCGCCGCGCCACTGCTTCTTTCTCCACCTCCAACCGCCTCGGTCACGGA GGCTTCGGATGCGTCTACAAAGCCGTCCTGTCCTCCTCCTCCTCGCTCGCCGTCAAGGTCATGGACCCAAACGGATCACTGCAAGGCGAGCGAGAGTTCC ACAACGAGCTCTCCATCGCATCATCTCTCGACTCGCCCTACATTGTCAGCCTCCTCGGCTACTCCACCGACCGCCGGAAGCGGAAGCTGGTGCTCGTGTA CGAGCTGATGGAGAACCGGAGCCTACAGGAGGCTCTGATGGATCGCAAGTGCGAGGAGCTCATGGACTGGAGCAAAAGGTATAGTGTGATGACTGATGTT GCTAGAGGCTTAGAGTACCTCCACCATTTCTGTAACCCTCCCGTGATTCACGGCGACGTTAAGCCCAGCAATATTTTGTTGGATTCGGATTTCAACGCCA AGATCGGCGAATTCGGCCTCGCTAGATTGAAGACGGAGGAAATCGCCGAGTGTGCTGCGGGAGAAGACAACGGATCTATTCTGGAAGAGGCGGCGGAGAG TGTCGCAGCGACGACTGGATACGAAGACAGCTCCGCCGCGGCAGCAGCAGGTGTAGTTCTGTCGCCGGTGAGTTTCTCCAGTAAGGTCTTGGATTCGGAT GCTTCGCCGGAGGCGACAGCGAGGAGCGTGTCGGAGGCGGATCGGGTGAGTATGGAGAGTGGGAGAGATTTGGGGAATGGAGGAGGAAAGAAAGGTGGAT CGAGAAGGGATTGGTGGTGGAAACAGGACAATGGAGTCGAATCGGAGTCCGGAAGAGTGAAGGATTACGTGATGGAATGGATTGGGAGTGAGATCAGTAA AGAGAACAGATCGAAACCTGAATGGAATAATCTCGAATCACCAAGCTCCGTCGACAACAGTCTTTTGACGGCGACGAGCTTAAAGATCGAGAAGAAGAAG AAGAAGATAAGCAAGCGATTGGAATGGTGGGCGTCTCTAGACGAAGAGAGGAGGATGAAGAAGAAGGAAAAGAATCGGAAACCTAGAGAATGGTGGAAGG AAGAGTTCTGCGACGAGCTAACAAAGAAGAACGGGAAGAAGAAGAAGAAAAGCAACGGCGGAGGAGAGTCATGGTGGCAGAAGGATGAAGATTCAGATCG GACTACTTCGACGACGGCGATGAAGAAGAAGAGGAAAAGCAGAGGAAGCATTGACTGGTGGATGGACGGATTAAGCGGCGAATTCAGAAGGAGGAACAGT AGCAGCCACGATTGGGCAAGCGGCGAATTCCCAAAGAGCGGCGGGATAAGCAGCACCCCTAGCATGCGAGGAACGGTGTGCTACATCGCGCCGGAGTACG GCGGCGGAGGAGCTGGATGCCAGCTGTCGGAGAAGTGTGACGTTTACAGCTTCGGCGTGTTACTACTCGTGGTCGTTTCAGGGCGTAGGCCGCTCCAAGT TACGGCATCCCCGATGTCCGAATTCGAGAGAGCAAATCTCATCTCGTGGGCTAGGCAGCTAGCTCACAACGGCAAGCTATTGGATCTCGTTGATCCTTTG ATACATTCGTTGGATAAACACCAAGCATTGCTTGTTATTACTATCGCATTGCTTTGCCTGCAGAGATCGCCTAGCAAGCGGCCGTCCATTAAGGAGATCG TGGAGATGCTCTCCGGCGAGGCTGATCCACCGCATTTGCCTTTCGAGTTTTCGCCATCTCCGCCGGCCAATTTCCCGTTCAAGTCAAGGAAGAAGGCCTA CCGGTGA
AA sequence Show only first row Show all	>Lus10041395 pacid=23179738 polypeptide=Lus10041395 locus=Lus10041395.g ID=Lus10041395.BGIv1.0 annot-version=v1.0 MPSRRLLSLPPPEHHHRTHHNTHLPAILAGSLAFALISLLFLFVFLYRKLSRHRTAPTSSSSDLKSPTHLQTTNQCRHFSYSLLRRATASFSTSNRLGHG GFGCVYKAVLSSSSSLAVKVMDPNGSLQGEREFHNELSIASSLDSPYIVSLLGYSTDRRKRKLVLVYELMENRSLQEALMDRKCEELMDWSKRYSVMTDV ARGLEYLHHFCNPPVIHGDVKPSNILLDSDFNAKIGEFGLARLKTEEIAECAAGEDNGSILEEAAESVAATTGYEDSSAAAAAGVVLSPVSFSSKVLDSD ASPEATARSVSEADRVSMESGRDLGNGGGKKGGSRRDWWWKQDNGVESESGRVKDYVMEWIGSEISKENRSKPEWNNLESPSSVDNSLLTATSLKIEKKK KKISKRLEWWASLDEERRMKKKEKNRKPREWWKEEFCDELTKKNGKKKKKSNGGGESWWQKDEDSDRTTSTTAMKKKRKSRGSIDWWMDGLSGEFRRRNS SSHDWASGEFPKSGGISSTPSMRGTVCYIAPEYGGGGAGCQLSEKCDVYSFGVLLLVVVSGRRPLQVTASPMSEFERANLISWARQLAHNGKLLDLVDPL IHSLDKHQALLVITIALLCLQRSPSKRPSIKEIVEMLSGEADPPHLPFEFSPSPPANFPFKSRKKAYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	0	1
AT3G57120			Protein kinase superfamily pro...		Lus10021451 [exp]	1.4	0.8703
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	1.7	0.8855
AT4G29240			Leucine-rich repeat (LRR) fami...		Lus10012929 [exp]	2.2	0.8657
AT2G43100		ATLEUD1, IPMI2	isopropylmalate isomerase 2 (....		Lus10004742 [exp]	3.5	0.8574
AT5G65250			unknown protein		Lus10000635 [exp]	3.5	0.8692
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	5.7	0.8444
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	6.3	0.8550
AT3G53380			Concanavalin A-like lectin pro...		Lus10026493 [exp]	6.7	0.8539
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	7.5	0.8688
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	9.8	0.8514

Compare expression of checked genes

Lus10041395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.