Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61050 583 / 0 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61030 328 / 3e-107 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 326 / 5e-105 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT5G11100 283 / 6e-89 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 278 / 2e-87 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 199 / 2e-57 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 189 / 8e-54 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 169 / 2e-46 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G53590 74 / 1e-13 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G19830 71 / 6e-13 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036532 [exp] 750 / 0 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10038117 [exp] 281 / 2e-88 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 280 / 2e-88 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 256 / 1e-79 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 255 / 4e-78 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 216 / 5e-65 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 204 / 5e-59 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 203 / 5e-59 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040414 [exp] 197 / 1e-56 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072800 [exp] 659 / 0 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 647 / 0 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.006G063900 [exp] 283 / 3e-89 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 281 / 2e-88 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 261 / 9e-81 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 200 / 1e-57 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.005G241700 [exp] 199 / 1e-57 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G223900 [exp] 198 / 3e-57 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 187 / 6e-53 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 186 / 1e-52 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10041396 pacid=23179709 polypeptide=Lus10041396 locus=Lus10041396.g ID=Lus10041396.BGIv1.0 annot-version=v1.0 ATGGAGGATTTCGCTGCTGATATTAAACTCCTTGGAACTCTGAACAGAGATGATTTGAAGAAATTATGTGGTGATAATTTTCCCGAGTGGATATCTTTCC CAGTGTTTGAACAGGTGAAATGGATGAACAAGAAACTAGGCAAGCTATGGCCCTATGTTGCTGATGCTGCGACTATGGTGGTTAAAGAATCTGTTGAACC ACTGCTAGAAGAGTACAGGCCTCCTGGTATCACTTCATTGAAGTTCAATAAGTTTTCCATGGGAACCGTGCCACCTAAAATTGAAGGTATACGTGTTCAA AGTCTGAAGAAAGGTCAAGTTATTATGGATATAGATTTCCGATGGTGTGGTGATCCAAGCATCATCCTAGGTGTTGAAGCTGCGATGGTTGCCTCTATAC CAATTCAGCTGAAGGATCTTGAGATGTACTCTGTTATTCGGGTTATCTTCCAACTTGCTGAGGAGATACCATGCATTTCTGCTGTTGTCGTTGCTTTGCT TTCTGAGCCAAAGCCTAAAATTGAGTACGTTCTAAAAGCTGTTGGTGGAAGCATATCTGCCATACCCGGTTTGTCAGATATGATCGATGATACAGTCCAA TCAATTGTTACCGATATGCTTCAGTGGCCTCACAGAATTGTTGTTCCAATTGGTGGCATACCTGTTGATACCAGTGATTTGGAGCTTAAACCCCAAGGGA AGCTGACGGTGACAGTAGTTAAAGCAAATGATTTGAAGAACATGGAAATGATTGGAAAGTCTGATCCATATGTTACTCTACATATCCGACCAGTGTTCAA GGTCAAGACACATACAGTGGAAAACAATCTCAATCCTGTCTTTAATCAGACGTTTGAGTTGATCGCTGAAGACAAAGAGACTCAATCACTTATTCTCGAG GTGTTTGATAAAGACATCGGCCAAGACAAGCGATTGGGAATCGTGAAGTTACCGCTCGTTGATCTCGAAGCAGAGTCTTGGAAAGATATGGAGTTGAGAC TTTTGCCGGCGCTTGATATGATGAAAATTAAAGATAAGAAGGATAGAGGAACTCTTACGCTGAAGGTACTGTACCACGAATTCAGCAAAGAGGAGCAGAT GGCTGCTTTGGAGGAGGAGAAGAGGGTCCTAGAAGAAAGGAAGAAACTGAAAGAAGCAGGAGTAATAGGGAGCACCATGGACGCCCTCGACGGTGCAGCT TCGTTAGTTGGCACCGGTCTAGCCGGCGGGGCTGGCCTCGTGGGGAGCGGCATTGGCGCCGGAGCTAACCTAGTAGGAAGCGGGGTGTCCGGTGGGGTTG GCATGGTTGGGAGTGGGCTTGGTGCAGTAGGGAGTGGGCTTAGCAAAGCTGGCAAGTTCATGGGAAGGACGATTACTGGGCAGAGCAGCAAGAGGAGTAG CTCTAATTCTTCCACTCCCACCGGCCAGGAAAACGGCGCCGGAAAGCATCTGTAG
AA sequence Show only first row Show all	>Lus10041396 pacid=23179709 polypeptide=Lus10041396 locus=Lus10041396.g ID=Lus10041396.BGIv1.0 annot-version=v1.0 MEDFAADIKLLGTLNRDDLKKLCGDNFPEWISFPVFEQVKWMNKKLGKLWPYVADAATMVVKESVEPLLEEYRPPGITSLKFNKFSMGTVPPKIEGIRVQ SLKKGQVIMDIDFRWCGDPSIILGVEAAMVASIPIQLKDLEMYSVIRVIFQLAEEIPCISAVVVALLSEPKPKIEYVLKAVGGSISAIPGLSDMIDDTVQ SIVTDMLQWPHRIVVPIGGIPVDTSDLELKPQGKLTVTVVKANDLKNMEMIGKSDPYVTLHIRPVFKVKTHTVENNLNPVFNQTFELIAEDKETQSLILE VFDKDIGQDKRLGIVKLPLVDLEAESWKDMELRLLPALDMMKIKDKKDRGTLTLKVLYHEFSKEEQMAALEEEKRVLEERKKLKEAGVIGSTMDALDGAA SLVGTGLAGGAGLVGSGIGAGANLVGSGVSGGVGMVGSGLGAVGSGLSKAGKFMGRTITGQSSKRSSSNSSTPTGQENGAGKHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	0	1
AT4G37440			unknown protein		Lus10014864 [exp]	1.4	0.8774
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	1.4	0.8876
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	1.7	0.8622
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	3.2	0.8476
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	4.9	0.8580
AT1G55535			unknown protein		Lus10021858 [exp]	4.9	0.8441
AT1G55535			unknown protein		Lus10010333 [exp]	5.9	0.8440
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	6.7	0.8334
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	7.4	0.8248
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	7.5	0.8370

Compare expression of checked genes

Lus10041396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.