Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53420 395 / 2e-140 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT3G54820 389 / 1e-137 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G37170 385 / 5e-136 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G37180 383 / 2e-135 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT5G60660 376 / 1e-132 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT2G39010 367 / 8e-129 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT2G16850 363 / 1e-127 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT4G35100 358 / 1e-125 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 313 / 7e-108 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 311 / 8e-107 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023515 [exp] 409 / 3e-145 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10040399 [exp] 398 / 5e-141 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10019934 [exp] 388 / 4e-137 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 384 / 2e-135 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014978 [exp] 365 / 4e-128 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 362 / 4e-127 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 362 / 5e-127 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10021475 [exp] 310 / 4e-107 AT2G39010 265 / 4e-89 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) Lus10028273 [exp] 308 / 2e-105 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222700 [exp] 410 / 4e-146 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.008G039600 [exp] 401 / 2e-142 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.006G128000 [exp] 396 / 2e-140 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 395 / 2e-140 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 395 / 3e-140 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 381 / 1e-134 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.009G136600 [exp] 369 / 4e-130 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.004G176300 [exp] 369 / 5e-130 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.016G113300 [exp] 317 / 2e-109 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 313 / 1e-107 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10041397 pacid=23179904 polypeptide=Lus10041397 locus=Lus10041397.g ID=Lus10041397.BGIv1.0 annot-version=v1.0 ATGACGAAAGAAGGGGTAGTAGCGGAGCGAGGCTCCTTCTCGGCCAAGGACTACCACGACCCGCCACCAGCTCCATTCTTTGGCGCCGCCGAGCTCGGCA AATGGTCCTTCTACAGAGCCTTAATCGCCGAGTTCATCGCCACTCTTCTCTTCCTCTACATCACCGTCCTCACCGTCATTGGCTACAAATTCCAATCCGA CGGCGACGCCTGTGGTGGCGTAGGCATTCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGTCCG GCCGCTTTTTTTATTATAAAATTTACTCTTTTGGGAGCAATCTGTGGGGTGGGGTTAGTGAAGGCTTTTCAGAAGTCTCACTACACCAGGTACGGCGGTG GAGCCAACTCCCTCAGCGCCGACTACAGCACCGGCACCGGAGTTGGTGCGGAGATCATCGGAACTTTCGTTTTGGTGTATACAGTTTTCTCCGCCACCGA TCCCAAGAGGAGCGCTCGTGATTCCCATGTCCCAGTATTAGCACCACTCCCAATTGGATTCGCGGTGTTCATGGTTCATTTGGCAACCATTCCGATCACG GGCACCGGTATCAACCCAGCCAGGAGTTTCGGAGCTGCTGTCATCTTCAACGAGTCGAAGCCATGGGATGACCATTGGATCTTCTGGGTTGGACCATTCG CGGGAGCAGCTCTGGCGGCATTCTTTCACCAGTTCATATTGAGAGCAGGAGCAGTCAAGGCACTTGGGTCCTTCAGGAGCAGCGCAAGTGCTGTATAA
AA sequence Show only first row Show all	>Lus10041397 pacid=23179904 polypeptide=Lus10041397 locus=Lus10041397.g ID=Lus10041397.BGIv1.0 annot-version=v1.0 MTKEGVVAERGSFSAKDYHDPPPAPFFGAAELGKWSFYRALIAEFIATLLFLYITVLTVIGYKFQSDGDACGGVGILGIAWAFGGMIFVLVYCTAGISGP AAFFIIKFTLLGAICGVGLVKAFQKSHYTRYGGGANSLSADYSTGTGVGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPIT GTGINPARSFGAAVIFNESKPWDDHWIFWVGPFAGAALAAFFHQFILRAGAVKALGSFRSSASAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Lus10041397 [exp]	0	1
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10038726 [exp]	3.9	0.8807
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	5.9	0.8879
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	12.2	0.8854
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	14.8	0.8762
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	17.3	0.8757
AT2G29180			unknown protein		Lus10040781 [exp]	18.0	0.8647
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	20.6	0.8686
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	21.2	0.8584
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	24.4	0.8689
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	27.6	0.8710

Compare expression of checked genes

Lus10041397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.