Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19290 427 / 3e-151 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 391 / 4e-137 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 196 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 169 / 1e-49 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 167 / 2e-49 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G62860 166 / 7e-49 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 165 / 7e-49 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 164 / 6e-48 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 160 / 4e-47 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 156 / 2e-45 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036530 [exp] 572 / 0 AT5G19290 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 181 / 2e-54 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10011212 [exp] 177 / 2e-53 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 169 / 2e-50 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 161 / 1e-46 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 166 / 2e-46 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 156 / 2e-44 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10009169 [exp] 154 / 2e-44 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018466 [exp] 151 / 5e-44 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040000 [exp] 469 / 1e-167 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 465 / 3e-166 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 291 / 8e-98 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 196 / 9e-61 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 176 / 4e-53 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 176 / 2e-52 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 164 / 1e-48 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 166 / 4e-48 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 159 / 3e-46 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 157 / 1e-45 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10041399 pacid=23179614 polypeptide=Lus10041399 locus=Lus10041399.g ID=Lus10041399.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTCGCCGTCCAGCATCCAGTTTCCGACGCCGACGATAAAACTCCCTTCGGAACCCTCTCCCCGGAGGAATTCTACGCCAAGCACGGCGTCT CCCATCACAAAGAGTACCGAACTAATTCACGCGGCTTCAAGCTCTTCACCCAGTGGTGGACCCCACTCCCTCCTGCCGACAAAATCGGGTGTGTTGCCGT CGTCCACGGCTACACCGGCGAGTCCAGCTGGTTCCTCCAGCTCACCTCCATTCTCTTCGCCAAGCACGGCTTCATCGTCTGCGCAATCGACCACCAGGGC CACGGCTTCTCCGACGCCCTTGACGGCTTAATCCACCACATGCCCGATATCAACCCTGTCGTCGACGACTGCATCGATTTCTTCAACGAATTCCGCGAAA CTCACGCCCGCAACCTCCCGGCGTTCCTCTACGCGGAGTCCCTGGGTGGCGCCATTGCATTGTACATCTCGCTCAAGCAGAAAGGCGCGTGGGACGGGCT CATCTTGAACGGTGACATGTGCGGGATCAGCGCCAAGTTCAAGCCTCCATGGCCGCTGGAGCACCTTCTGTTCATAGTGGCCGCTGTGATCCCTACATGG CGCCACGCTATGGCCAGCCCGAGGCGGAGCGTGGCCAGACCACGCGCGGCGACAGCTCTGGAGCTGCTGAGGGTTTGTAGGGATTTGCAAGGGAGATTCG AGGAAGTGGATGTCCCGCTGCTCATCTCTCACGGCGGCGATGACGTGGTGTGCGACCCTGCTTGCGTTGAAGAGCTTCACCGACGCGCCTCCAGCAAGGA CAAGACTTTGAAAATATACCCAGGGATGTGGCACCAGATGGTTGGCGAGGACCAGGATAATGTTAATTTAGTGTTTGGTGATATGATCTCTTGGTTGAAA GCCCGTGCCCAACCCGCCATCGGAAACTGA
AA sequence Show only first row Show all	>Lus10041399 pacid=23179614 polypeptide=Lus10041399 locus=Lus10041399.g ID=Lus10041399.BGIv1.0 annot-version=v1.0 MAEVAVQHPVSDADDKTPFGTLSPEEFYAKHGVSHHKEYRTNSRGFKLFTQWWTPLPPADKIGCVAVVHGYTGESSWFLQLTSILFAKHGFIVCAIDHQG HGFSDALDGLIHHMPDINPVVDDCIDFFNEFRETHARNLPAFLYAESLGGAIALYISLKQKGAWDGLILNGDMCGISAKFKPPWPLEHLLFIVAAVIPTW RHAMASPRRSVARPRAATALELLRVCRDLQGRFEEVDVPLLISHGGDDVVCDPACVEELHRRASSKDKTLKIYPGMWHQMVGEDQDNVNLVFGDMISWLK ARAQPAIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	0	1
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	2.0	0.8272
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	4.6	0.8188
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	5.5	0.7953
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	6.9	0.8206
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	7.7	0.8009
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	8.0	0.8146
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	8.2	0.7480
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	12.4	0.7686
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	14.7	0.7350
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	15.5	0.7187

Compare expression of checked genes

Lus10041399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.