Plant FIBer expression Database

Lus10041400 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036528
[exp]
395 / 3e-140 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G040200
[exp]
114 / 1e-30 ND /
PFAM info
Representative CDS sequence
>Lus10041400 pacid=23179668 polypeptide=Lus10041400 locus=Lus10041400.g ID=Lus10041400.BGIv1.0 annot-version=v1.0
ATGAAACCCAAGATCCCAAACGCAAAACCATCGTCGTCGTTACTGAAGCGGCAAATCCGAAACCCGGAAGTGTACAGAGAAGCCATAGTTCTATGCATGG
AGATCATCATCCTACTTGGATTCCACCTCCTCTTCTACACAACCCTCCTCATCCTCCAACAGCTCTTCTCCTCCGCCGCCCTCCTCCTCCTCCCCGTCTC
CGTAGCCGCCGTCTTCACCATCGGAACCACTGTCGGAAGCTTCCCCATCGCCGTCCTCCGCAAGCTCATGCGCACTAGGGAGAGGCTTGGCGACGCCGTC
ACCTACGCCATCGACAACATGCACGAGAGGGCGCGTCGGGATCACGCCTTTGATCTTTTCGATATCGACGGTGACGGTGATATCGATGATGATGCCAAGT
CGCCTAAGATCGTCGCCATGTGGACGAGTTTCGCCGCCTACGTGGGCCTCTTCGCTCAGATCGTTCTCCGGTATCCTTTCTCGGCCGACACGTTTTTCGC
CGGTGGGATGATCGCCATCGCCATCGTTGCTAATCTCGTCACCTACTTCTCCTTCTTTTGGAATGCCGCTGCCCGTAATAAGGAGATTGAAGAATTAGAG
GAAGTGAAGAGCAAGTTCAGAGAAGAGAGAGGAAGGTGGGAGGAAGAGAAGAGAAATCTAAGAGAAGAGTTGGTTAGGGCAAAGCATATTGGAGGTGATC
ATCAACAATCACAAAGGCCTTCTTCTCCGCCAATTCCTAGACCTTTAGGCAGGGCCAATTCTGGTCCTGTTAGTTTAGCTTCTTACACTATGTTTGGAAA
TTTTGATTGGGATTAA
AA sequence
>Lus10041400 pacid=23179668 polypeptide=Lus10041400 locus=Lus10041400.g ID=Lus10041400.BGIv1.0 annot-version=v1.0
MKPKIPNAKPSSSLLKRQIRNPEVYREAIVLCMEIIILLGFHLLFYTTLLILQQLFSSAALLLLPVSVAAVFTIGTTVGSFPIAVLRKLMRTRERLGDAV
TYAIDNMHERARRDHAFDLFDIDGDGDIDDDAKSPKIVAMWTSFAAYVGLFAQIVLRYPFSADTFFAGGMIAIAIVANLVTYFSFFWNAAARNKEIEELE
EVKSKFREERGRWEEEKRNLREELVRAKHIGGDHQQSQRPSSPPIPRPLGRANSGPVSLASYTMFGNFDWD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10041400
[exp]
0 1
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Lus10042155
[exp]
5.5 0.8508
Lus10042024
[exp]
11.5 0.8425
AT5G66780 unknown protein Lus10041741
[exp]
11.6 0.7733
Lus10002291
[exp]
13.7 0.8242
AT1G71530 Protein kinase superfamily pro... Lus10001470
[exp]
13.9 0.8285
AT5G21090 Leucine-rich repeat (LRR) fami... Lus10042755
[exp]
14.0 0.7621
AT3G06530 ARM repeat superfamily protein... Lus10026144
[exp]
18.3 0.8240
AT5G06570 alpha/beta-Hydrolases superfam... Lus10008441
[exp]
18.7 0.8126
AT5G52170 HD HDG7 homeodomain GLABROUS 7 (.1) Lus10035095
[exp]
19.6 0.8177
AT5G58980 Neutral/alkaline non-lysosomal... Lus10021829
[exp]
22.6 0.8046

Lus10041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.