Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54950 637 / 0 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT2G39220 632 / 0 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT4G29800 561 / 0 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 278 / 5e-90 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G37060 142 / 7e-38 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 137 / 8e-36 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT2G26560 125 / 1e-31 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37050 118 / 6e-29 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT5G43590 106 / 6e-25 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036526 [exp] 876 / 0 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10040394 [exp] 757 / 0 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 692 / 0 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 356 / 1e-119 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 221 / 2e-69 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10022040 [exp] 222 / 4e-69 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10036212 [exp] 157 / 7e-44 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10009340 [exp] 147 / 8e-40 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 124 / 6e-31 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040500 [exp] 721 / 0 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.010G221700 [exp] 716 / 0 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.012G123900 [exp] 414 / 2e-142 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 403 / 6e-138 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.005G210100 [exp] 287 / 2e-93 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.002G052600 [exp] 281 / 3e-91 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.007G042200 [exp] 155 / 1e-42 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.002G128300 [exp] 151 / 5e-41 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 133 / 2e-34 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 133 / 2e-34 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10041402 pacid=23179880 polypeptide=Lus10041402 locus=Lus10041402.g ID=Lus10041402.BGIv1.0 annot-version=v1.0 ATGGAATACGCTAGGCGTCAGTCGTCAGAAATGCAAGAGCCCAGCATCGACACCGACAAACTCAGTTACGAAATTTTTTCAATCCTCGAAAGCAAGTTCC TTTTCGGCTATGACGACCAGGAACTCTGGATTCCCATGCCCCAACCTCTGACTCCTCCGCCGGCCGATGTCGGCGTCGCTGCCATCAAGAACCAGCGAGG TAAAATCTGTATACTATCGATCGACGGCGGCGGAGGTATGAGAGGGATTCTTGCCGGAAAAGCTTTGGCCTATCTCGAACAAGCGCTCAAAAAGAAATCA GGCAATCCTGATGCGAGAATCGCCGATTACTTCGACGTGGCGGCCGGAACAGGCGTCGGCGGGATCTTCACGGCGATGCTGTTCGGGACGAAAGACGAAA GCCGCCCGATTATGGAGGCGGAGGATACATGGAAGTTCCTCGCCGATAATGGAAGACAGTTCTTCCGGCCAGCAGCAGGTAATGGTAGCGGGTTTCTAAA GCGGGCTTTCGGAAAAGGGTCGGGTTCAGGAACGGTCGGGTTGGACAAAGCAATGAAAGAGACGTTCAAGCAATTAACACTGAAAGATACATTGAAACCC ATTTTGATCCCTTGCTACGACCTCTCCAGCACGGCGCCGTTTCTCTTCTCTCGTGCCGATGCTTTAGAGACCGACAGCTTCGATTTCCGGCTATGGGAGG TTTGCCGGGCTACGTCGGCCGACCCGGGGATGTTCGAACCGGTTCAGCTGAGGTCGGTCGATGGTCGTACCAAGTGTTTGGCGATCGACGGTGGGCTAGC GATGAGCAATCCAACCAGTGCGGCGATCACCCACGTGCTACACAACAAACAAGAGTTCCCGTTTGTGAGAGGCGTCGAGGATTTGCTGGTTCTGTCGCTC GGCATCGGCGGCCAGCTGGTTGAAGTTAGCTACGACTATGAGCAAGTGAAAGCGTGGAAGCCCAAGCACTGGGCGAGACCCATGGCTCGCATTTCCGGTG ATGTTTCTGCTGATTCTGTGGACCAGGCCGTGGCCATGGCGTTCGGTCAGTGTCGGAATAGCAACTACTTGAGGATTCAGGCGAATGGGTCAAGCTTAAG CAGGTGTGGTGCCAATATCGAAACTGAGGCTAGTCCTAAGAACGTGAAGCTGCTGTTGGGAATGGCAGAGGAAATGCTAAAGCAGAAAAATGTGGAGTCA GTGCTGTTTGGAGGTAAAAGGATAGGTGAGCATAGTAACTTTGAGAAGCTGGACTGGTTTGCAGGTGAACTTGTGCTGGAACATCAGAAGAGGAGCTGCA GAATTGCTCCCACTGTTGCTTTCAAGCAGCAAGTTACTGCTGCAGCCAGACCCACATGA
AA sequence Show only first row Show all	>Lus10041402 pacid=23179880 polypeptide=Lus10041402 locus=Lus10041402.g ID=Lus10041402.BGIv1.0 annot-version=v1.0 MEYARRQSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQELWIPMPQPLTPPPADVGVAAIKNQRGKICILSIDGGGGMRGILAGKALAYLEQALKKKS GNPDARIADYFDVAAGTGVGGIFTAMLFGTKDESRPIMEAEDTWKFLADNGRQFFRPAAGNGSGFLKRAFGKGSGSGTVGLDKAMKETFKQLTLKDTLKP ILIPCYDLSSTAPFLFSRADALETDSFDFRLWEVCRATSADPGMFEPVQLRSVDGRTKCLAIDGGLAMSNPTSAAITHVLHNKQEFPFVRGVEDLLVLSL GIGGQLVEVSYDYEQVKAWKPKHWARPMARISGDVSADSVDQAVAMAFGQCRNSNYLRIQANGSSLSRCGANIETEASPKNVKLLLGMAEEMLKQKNVES VLFGGKRIGEHSNFEKLDWFAGELVLEHQKRSCRIAPTVAFKQQVTAAARPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	0	1
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	3.6	0.7528
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	4.9	0.7371
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	5.9	0.7259
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	6.0	0.7326
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10025241 [exp]	6.3	0.7089
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	9.0	0.7358
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	9.5	0.7188
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10032853 [exp]	13.0	0.6766
AT2G41810			Protein of unknown function, D...		Lus10035451 [exp]	19.7	0.7104
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	29.0	0.6896

Compare expression of checked genes

Lus10041402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.