Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28880 1045 / 0 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT5G05730 172 / 4e-45 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT2G29690 169 / 6e-44 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT3G55870 155 / 6e-40 ADC synthase superfamily protein (.1) AT5G57890 99 / 1e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G25220 98 / 2e-22 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT1G25083 96 / 5e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 96 / 5e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 96 / 5e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 90 / 8e-20 Glutamine amidotransferase type 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036525 [exp] 1709 / 0 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10014842 [exp] 184 / 7e-49 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10016945 [exp] 169 / 6e-44 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014830 [exp] 168 / 1e-43 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10009888 [exp] 154 / 5e-39 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10030761 [exp] 104 / 3e-24 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10013241 [exp] 102 / 8e-24 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10023622 [exp] 68 / 2e-11 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) Lus10024255 [exp] 56 / 2e-07 AT1G18870 459 / 2e-158 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221500 [exp] 1249 / 0 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.010G190600 [exp] 172 / 2e-45 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.009G044300 [exp] 155 / 3e-39 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1) Potri.008G138800 [exp] 100 / 4e-23 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G102200 [exp] 99 / 1e-22 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.008G066600 [exp] 68 / 2e-13 AT3G55870 213 / 3e-68 ADC synthase superfamily protein (.1) Potri.012G070000 [exp] 63 / 5e-10 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I CL0014 [flax] [poplar] PF00425 [flax] [poplar] Chorismate_bind chorismate binding enzyme CL0014 [flax] [poplar] PF04715 [flax] [poplar] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Lus10041403 pacid=23179679 polypeptide=Lus10041403 locus=Lus10041403.g ID=Lus10041403.BGIv1.0 annot-version=v1.0 ATGAAGTTGGGTGTGTGCTCATCATCTTGTTTGGATGTCAAAAGCCCCTCTTCTCACGAGGGTCTGCTGTGTGCCAATGGGAGTTTGCTACGGGCCTCCA AGCCCTTCCTGAACGTTGGTTATGTTACCAAGACTGCAAGTGTTAGAGAATCTTCTTATCAGAACGGTAAGAGGTTGGTGGTAGCTAGCCACACTGTTCC TCGATGCTTACATGAGTCTTTCACTGGGAAGAAACAGCTGCAGGAGCCTATTCGGGAGGTGGATTTCGTTAGGACGCTATTGATTGACAACTATGACAGT TACACCTACAACATATACCAAGAGCTTTCTGTGGTCAATGGAGTGCCTCCTGTGGTGATTCGGAATGACGAATGGACTTGGGAACAACTATGCTATTACC TGTATAAAGAAAAAGCATTTGACAATATTGTCATATCACCTGGACCTGGGACACCTACATGTGCAGCAGACATAGGTATGTGTCTTCGCTTGCTACATGA GTGCAGGGATATTCCTCTTCTGGGTATTTGTCTTGGTCACCAGGCCATGGGTTATGTGCATGGCGCACGTATTGTACATGCATCTGAACCAGTCCATGGA CGTCTGAGTGAAATTGAACATGATGGGTGCAGATTGTTTAGTAATATCCCTTCTGGTCCAGAATCTGGCTTCAAGGTGGTACGCTATCATTCTCTTGTCA TCGATGCAGAATCACTGCCAAAGGAACTCATACCAATTGCTTGGACTAGCTCCATTGGGACACATTCTTTCCTTGAAACACATAGCTCTAGTGCCCTTCC TTATGAGCTTGAGCACGAGATTACCGTTGATGACTTTTATAATGACCTTTCAGCAGCAATACAAGATGTTAGCTTGCAGTCTTCTAACCATTCTGGAAAC ATGCTTAGGAGAAAAGTTGTTATGGGCATTAAGCATTCTACTTGGCCTCATTATGGCTTGCAGTTCCATCCGGAGAGCATTGCCACCTGTCACGGTAGAC AAATTTTTGAGAACTTCAGGGAGATCACTGAGGATTATTGGCAGAAATGGAGGTCAGCATCTATCGATGGACATAGTATTCATTACCCTGCACGCATGCA GGTGTCAGATGCTAGTAATCTATTTCAATTTTCTAAGAGCAGGCAGTTGGTATGCAATGCAAGTGATCATCCATTTGCCGATGCTTCTTTAAGAAGAGAA CTAAGGGTCAATGCAGATGTTGCAGAGTCGAGCCGGCTGAACTTTTCCGTTTCAGGCATCAGTCATAAGCATTTGAAATTGAAATGGAGGAAATTTGATC AATTTGCATCTCGCATTGGTGGATCCAGAAATATATTTTCTGGACTCTACGGAGAGCTTGACGGAGATAATACATTTTGGTTGGACAGTTCTTCAGTTGA AAAGGGCAGAGCTCGTTTCTCTTTCATGGGAGGTAAAGGTGGAGCACTTTGGAAACAAATGACTTTCAAACTGTCAGATAAAAGTGGTGGGGATTCTAAA CGTGGAGGTCACTTATCAATTGAAGATTCTGAAGGGTCTACCAGCAGCATTTTGTTGGAGAATGGCTTTCTTGATTTCTTAAATCAGGAGCTTCAATCAT ATGATTATGATGAAAAAGATTTTGAAGGACTACCGTTCGAATTTTATGGTGGATACATTGGTTACCTTGGGTACGGCCTCAAAGTTGAATGCAGCAGAAT ATCCAACCAACATGAATCTGGAACACCTGATGCCTGCTTTTTCTTTGCTGACAATTTTGTAGTCATTGATCACAGTACGGATGACGTATACATATTATCG GTACATGAGGCAGGCACTAGTAGCATGGAATGGTTAGATGATACTCAAAACAAGCTCCTCCATCTGCACCCTACTTCTTCAGCCAAATCAAATGTTCAAA CTCCCCAGACCAGCTCATTTTGCCCCTCCGAGGTGGGTTTTCGCCCTGAGAAATCTAGAGCGCAGTATATTGAAGATGTTAACAAGTGTCTGGATTACAT CAAGGATGGAGAAAGCTACGAGTTATGTTTCACTTCTCAGTTACGGAAAAGAGTTGGAGATATTGATTCTTTGGGACTTTACCTTCACCTTAGAGAGAAA AACCCTGCGCCATATGCTGCATGGCTTAATTTCTCAAGTGAAAATCTGTCCATCTGCTGTTCTTCACCCGAAAGGTTCCTGAGGTTGGACGGAGATGGTG TACTAGAAGCCAAGCCTATTAAGGGCACGATAGCTCGGGGCACAACTAAGACACAAGATGAACAGCTTAAAACTCAATTGCAGTATAGTGAAAAGGATCA AGCCGAAAACCTTATGATTGTGGACCTTCTAAGGAATGACCTTGGTCGAGTCTGCGAGCCTGGCTCTGTCCATGTCCCACGTCTCATGGAAGTGGAATCA TATGCAACGGTCCATACGATGGTAAGCACAATTCGGGGCCAAAAGAAGCCAAGTGTGAGTGCGGTAGACTGTGTCAAAGCTGCATTTCCAGGGGGCTCAA TGACAGGTGCCCCAAAGTTGAGATCAATGGAAATTCTGGATGGATTGGAAAACTGCTGTCGCGGAATCTACTCTGGGTCGATTGGGTATTTCTCATACAA CAAAACGTTTGATCTTAACATTGTGATAAGAACAGTGGTGGTACACCAAGGTGAAGCCTCAATAGGAGCAGGTGGAGCCATTGTTGCTCTGTCAAATCCT GAAGACGAGTATGATGAGATGTTGCTGAAAACTCGTGCACCGGCAAGAGCTGTGGTAGATTTTGAATAG
AA sequence Show only first row Show all	>Lus10041403 pacid=23179679 polypeptide=Lus10041403 locus=Lus10041403.g ID=Lus10041403.BGIv1.0 annot-version=v1.0 MKLGVCSSSCLDVKSPSSHEGLLCANGSLLRASKPFLNVGYVTKTASVRESSYQNGKRLVVASHTVPRCLHESFTGKKQLQEPIREVDFVRTLLIDNYDS YTYNIYQELSVVNGVPPVVIRNDEWTWEQLCYYLYKEKAFDNIVISPGPGTPTCAADIGMCLRLLHECRDIPLLGICLGHQAMGYVHGARIVHASEPVHG RLSEIEHDGCRLFSNIPSGPESGFKVVRYHSLVIDAESLPKELIPIAWTSSIGTHSFLETHSSSALPYELEHEITVDDFYNDLSAAIQDVSLQSSNHSGN MLRRKVVMGIKHSTWPHYGLQFHPESIATCHGRQIFENFREITEDYWQKWRSASIDGHSIHYPARMQVSDASNLFQFSKSRQLVCNASDHPFADASLRRE LRVNADVAESSRLNFSVSGISHKHLKLKWRKFDQFASRIGGSRNIFSGLYGELDGDNTFWLDSSSVEKGRARFSFMGGKGGALWKQMTFKLSDKSGGDSK RGGHLSIEDSEGSTSSILLENGFLDFLNQELQSYDYDEKDFEGLPFEFYGGYIGYLGYGLKVECSRISNQHESGTPDACFFFADNFVVIDHSTDDVYILS VHEAGTSSMEWLDDTQNKLLHLHPTSSAKSNVQTPQTSSFCPSEVGFRPEKSRAQYIEDVNKCLDYIKDGESYELCFTSQLRKRVGDIDSLGLYLHLREK NPAPYAAWLNFSSENLSICCSSPERFLRLDGDGVLEAKPIKGTIARGTTKTQDEQLKTQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPRLMEVES YATVHTMVSTIRGQKKPSVSAVDCVKAAFPGGSMTGAPKLRSMEILDGLENCCRGIYSGSIGYFSYNKTFDLNIVIRTVVVHQGEASIGAGGAIVALSNP EDEYDEMLLKTRAPARAVVDFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	0	1
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037055 [exp]	3.7	0.8465
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10000060 [exp]	5.2	0.8095
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	7.1	0.8610
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	7.2	0.8551
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	7.3	0.8688
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10020044 [exp]	7.7	0.8426
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10021361 [exp]	8.8	0.8617
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	12.0	0.8290
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	12.4	0.8054
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	13.7	0.8280

Compare expression of checked genes

Lus10041403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.