Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39180 849 / 0 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT3G09780 828 / 0 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT3G59420 335 / 4e-102 ACR4 crinkly4 (.1) AT5G47850 244 / 6e-70 CCR4 CRINKLY4 related 4 (.1) AT3G15890 179 / 1e-49 Protein kinase superfamily protein (.1) AT5G28680 187 / 2e-49 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G58690 179 / 3e-49 Protein kinase superfamily protein (.1) AT1G52540 177 / 3e-49 Protein kinase superfamily protein (.1) AT1G67720 184 / 2e-48 Leucine-rich repeat protein kinase family protein (.1) AT5G54380 182 / 7e-48 THE1 THESEUS1, protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036524 [exp] 1527 / 0 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10015956 [exp] 330 / 3e-100 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 327 / 4e-99 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10029170 [exp] 222 / 8e-62 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10040663 [exp] 195 / 3e-52 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 188 / 7e-50 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10040467 [exp] 180 / 3e-48 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10038595 [exp] 175 / 3e-48 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10001323 [exp] 173 / 2e-47 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221200 [exp] 1031 / 0 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G089200 [exp] 874 / 0 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.017G029900 [exp] 321 / 1e-96 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 310 / 7e-93 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.008G068700 [exp] 231 / 1e-64 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 230 / 1e-64 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.010G188600 [exp] 229 / 3e-64 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 215 / 3e-59 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.004G105200 [exp] 188 / 3e-50 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.011G058300 [exp] 179 / 4e-50 AT5G46080 327 / 4e-111 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041404 pacid=23179999 polypeptide=Lus10041404 locus=Lus10041404.g ID=Lus10041404.BGIv1.0 annot-version=v1.0 ATGGGAATCGGGAAATACCTCTACTGTTCTTTATCTTTAGCTGCTACTCTTTTCCTGATCCTAAGACTTCCGATCACAGCTTTCGGGTACGGATCTTCTG GGCCGGTTGCAGCTGCATTTGGCAGTGATGGGTTCTTCTGCGCCATTGATGCAGGAGGGAAGCAAGAAATCCTATGTTGGGATAAAGATGACACTTTCAC TGCCTCATCATCATCACCCGGTTACTTCGCTTCCTTGCCTACTATGGCTTCCCTCTCCGGCGGGGAAGAGTTCCTCTGCGGCATTACGTCGAACACTTCC CTGGCATTCTGCTTTAAGATGTCGGATCCAGGTACTAATCTTGTCCCGACACGTTTTCGCTACACTTCTTACTCCAAGGTTGCAGCAGGAAAGAAACACG TTTGTGGGATTCGAGGGTCTTATTACTCCGTCGGGTTGGAGGAATATGGTGGAATTGATTGTTGGGAATTCAATCAATCAATTGCCAATTCTTTCTCCTC TTCTTACGTCGATAGCCTTTTGTTCAAGAACATTGTCGCTGGAGATGGCTTTAGCTGTGGGGTTGCTGAAGGGACTGGGGTAATTTGCTGGGGACCCAGA TCAGGAAAAATGGATATTCCAACTTTGTCAAGTGATTTTGAGATTTTGGCCTCAGGAAAAAGCTCAGTGTGTGGGGTTTCTAGCCACAGCAGAGAAGTTC AATGCTGGGGTGAGGCCAGTGAATTTGGTTCCTCACCAACTTCCGAGACTAAATTTGTTGATATTACAACCGGTGGTGATTATTATTGTGGGATTCGTGA GGATAATCACGAGGTTGAGTGTTGGGGAAACACTGTTAATTCCGTTCAAAAAGGTTCTGGATTTCTAGCCATTGCTTCATCAGATTCATCTGTTTGCGGG ATTAGAGAAGTTGACCTTGTTCTAGACTGCTGGAATGTTCGTGGAAAGACACCTCCAGATTACAGGCCTCCTCTGCAGCTGTGCAGCCCTGGGATATGCT CATCGGCCGAATCATGTCCTGACCGAATGTTTATATTCAATGCAAGCATACTGAATGAGCCAGAGTTGACCAATGTTTGCGCTAGAAAATATCTCAAGAT ATGTTTGCCTTGTGGAACTAACTGTTCCGAGGGCTATTTCCCTTCAAGTGTGTGCACTGAGAATGCAGACAGGATATGCACTGCTTGTTCACTTTGCCAG AACAGCTCTTGTTGGGATATCTGTGGCCATCCGTCTCTACCACAGACTAATCAGATGGAGCAACGGCAGATTAAGAAACTTGCATTCATCATTGGCATTT CCGTGGCTGGTTTCTTGTTACTTTTCACTGCAGGATGCTGTCTCATTTTCCAGATTAAAAGGACTAGTAGCAAGAAAACGAAATGCTGTCATTGCATTTT CTGCATGAGCGAGCCAGTTGTGGAGGCTGATCCAGATCACGATCCGGAACCCCCCATTCCTTTTACTACATTGTATGTAGAGGATGCTCAAGTGTTCCGG CTATCTGAGCTTAAAGATGCCACACATGGTTTCAAGGAGTTCAATGAGCTAGGGAGAGGGAGCTTTGGCTTCGTTTACAAGGCTGTACTGTCCGATGGCA GGCATGTGGTAGTGAAGAGGGCTAATGCAACCACCATAATCCACACCAACAGCCGGGAATTCGAATCGGAGCTCGAAATCTTATGTGGGTTAAGACATGC TAACATTGTGAACCTGCTGGGTTATTGTGCTGAGATGGGAGAAAGGTTAATGGTGTACGAGTACATGGCTCATGGAACACTCTACGACCACCTACATGGG GAGCTTTCTCCACTTGATTGGAGCTTAAGGCTGAAAATATCATTGCAGGTGGCACGTGGGCTTGAATACCTGCACAAGGAAGTGATTCCAAGCATAGTTC ATCAAAACTTGAAGACGTCGAAAGTGCTGTTGGATTCGGGATGGGGGGCGAGGATTGCTGACTTTGGATTCTCACATGGGAATGAGCACAAGGAGATTGA TGGAAACAAGGAGAGTGATGTGTACAGTTATGGGATTATTCTACTGGAGATATTGAGTGGAAGGAAAGCTTACGACAGAGAGTGCACCCCACCGGGTATT GTGGAATGGGCATTACCTTTAATCAGGTCAGGGAAGTCAGCCGCCATTATTGACAGGAATGTGGCTTTGCCAAGGAATGTAGAGCCATTGCTTAAAGTTG CAGACGTTGCAGAGGCTGCTCTCAAGGAGAATCCAACTCAACGGCCTGACATCTCAACTCTGTCAACTATGTTGGATGAAATTGTGAGAGTTGGGTTGAT ATTCTAA
AA sequence Show only first row Show all	>Lus10041404 pacid=23179999 polypeptide=Lus10041404 locus=Lus10041404.g ID=Lus10041404.BGIv1.0 annot-version=v1.0 MGIGKYLYCSLSLAATLFLILRLPITAFGYGSSGPVAAAFGSDGFFCAIDAGGKQEILCWDKDDTFTASSSSPGYFASLPTMASLSGGEEFLCGITSNTS LAFCFKMSDPGTNLVPTRFRYTSYSKVAAGKKHVCGIRGSYYSVGLEEYGGIDCWEFNQSIANSFSSSYVDSLLFKNIVAGDGFSCGVAEGTGVICWGPR SGKMDIPTLSSDFEILASGKSSVCGVSSHSREVQCWGEASEFGSSPTSETKFVDITTGGDYYCGIREDNHEVECWGNTVNSVQKGSGFLAIASSDSSVCG IREVDLVLDCWNVRGKTPPDYRPPLQLCSPGICSSAESCPDRMFIFNASILNEPELTNVCARKYLKICLPCGTNCSEGYFPSSVCTENADRICTACSLCQ NSSCWDICGHPSLPQTNQMEQRQIKKLAFIIGISVAGFLLLFTAGCCLIFQIKRTSSKKTKCCHCIFCMSEPVVEADPDHDPEPPIPFTTLYVEDAQVFR LSELKDATHGFKEFNELGRGSFGFVYKAVLSDGRHVVVKRANATTIIHTNSREFESELEILCGLRHANIVNLLGYCAEMGERLMVYEYMAHGTLYDHLHG ELSPLDWSLRLKISLQVARGLEYLHKEVIPSIVHQNLKTSKVLLDSGWGARIADFGFSHGNEHKEIDGNKESDVYSYGIILLEILSGRKAYDRECTPPGI VEWALPLIRSGKSAAIIDRNVALPRNVEPLLKVADVAEAALKENPTQRPDISTLSTMLDEIVRVGLIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10041404 [exp]	0	1
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038737 [exp]	13.2	0.8558
AT4G35690			Arabidopsis protein of unknown...		Lus10041835 [exp]	14.4	0.9123
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	22.5	0.9087
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007560 [exp]	25.2	0.9076
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10008627 [exp]	27.2	0.8811
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	32.1	0.9063
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	36.2	0.9045
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	37.9	0.9007
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	38.2	0.8994
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10017696 [exp]	41.2	0.8983

Compare expression of checked genes

Lus10041404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.