Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47540 445 / 1e-156 Mo25 family protein (.1) AT4G17270 422 / 8e-148 Mo25 family protein (.1) AT2G03410 368 / 4e-126 Mo25 family protein (.1) AT5G18940 226 / 4e-71 Mo25 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036523 [exp] 721 / 0 AT5G47540 446 / 1e-156 Mo25 family protein (.1) Lus10010497 [exp] 444 / 2e-156 AT5G47540 594 / 0.0 Mo25 family protein (.1) Lus10017565 [exp] 443 / 5e-156 AT5G47540 593 / 0.0 Mo25 family protein (.1) Lus10027342 [exp] 434 / 2e-152 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 381 / 1e-131 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10034014 [exp] 213 / 1e-65 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10012762 [exp] 199 / 7e-60 AT5G18940 512 / 0.0 Mo25 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222800 [exp] 483 / 9e-172 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.014G162100 [exp] 485 / 3e-171 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.006G014800 [exp] 442 / 1e-155 AT5G47540 569 / 0.0 Mo25 family protein (.1) Potri.016G011100 [exp] 433 / 3e-152 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.010G155400 [exp] 430 / 8e-151 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.019G057100 [exp] 321 / 1e-107 AT5G47540 411 / 5e-144 Mo25 family protein (.1) Potri.010G155300 [exp] 236 / 3e-76 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.010G028700 [exp] 226 / 6e-71 AT5G18940 469 / 5e-167 Mo25 family protein (.1.2) Potri.008G198900 [exp] 216 / 6e-67 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2) Potri.016G011300 [exp] 168 / 5e-51 AT5G47540 262 / 1e-88 Mo25 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08569 [flax] [poplar] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Lus10041405 pacid=23179815 polypeptide=Lus10041405 locus=Lus10041405.g ID=Lus10041405.BGIv1.0 annot-version=v1.0 ATGATCGGCAGAGGCGGTGGTGGAATTCGGATGCCATATAGAGAATCATCGCTAACAACAACAACAATACCAACAGAGTGCACATTGGTGGTAGGTTGCG TGACGATGAAAGGACTATTCAAACACAAGAGTCGGACTCCTGTGGAGCTTGTGCAATATGCCCGCGACCTCCTCCTCTTCGTCGATTGCAATTCCGCCGA CGTGCCTAAAAAGAAGCGCGACGATAAGATTGCGGAGCTGGGGAAAGTGCTAGTCGAAATGCGGACGATTCTATTCGGTGAAGGTCAGGCTGAGCCCAAT GCTGATGCTTGTTCACAAGTGACGCAAGAGTTCTTCAGAGAGGATACGTTACGAGTCCTCATTGGCTGCCTCCCCAAGCTCGGCCTTGGGCCTCGTCAGA TTGCGGCGAGTGTGATAACGAATTTGCAGAAGCAACGCGTCCAAGGATGTCTAGTAGCTCCCGAGTACATGGAGAGTAATTTGGATCTTATGGAAATTCT GCTGCCTGGTTATGAAGATGCTGATATCGCATTAACTTATGGCTCGATTTCGAGAGACCTGATATGCCATCAAGTTGTAGCAAAGTACGTTCTTGAATCA GCACACATGTCTAGGTTCTTTACTTACGTTCAGCTCCCGAATTTTGAAATCGCATCGGTTGCTCAAGCTACCTTTAAAGAACTTCTGACAAGACACAAAT CAACTGTTGCTGAATTCCTTTCTAACAGTTATGATTGGTTTTTCCAGGAGTACAATTCGCAGTTGCTTGAATCTAAGGAGTACATTACTCGAAGGTACGC TATCAAGCTGTTGGGAGACATGCTGCTTGATCGCTTGAATGCAGCTGTAATGGTTCGATATGTGAGCTCGTTGGATAACATGAGGATACTGATGAACCTT TTCAGAGAAGAAAAGAAGTCGATACAGATGGAAACTTTTCATGTGTTTAAGTTGTTTGTGGCGAATCAAAGTAAGCCTCCTGAGATCATCAGTGTACTGG CTAAAAACAAGAACAAGTTGCTGAGGTTCTTGGCTGGTTTAAAGACGGAGAAAGAGGATGAACAATTTGAAGCAGACAAATCTCTAGTAATTAAAGAGAT TGCACGCCTTGAAGACAAATCTCAAGTGATTAGAGAGACTCCAAACCTAGAAATAAATGATCGTCCAACCTCTGAATTAGATAATGAAGCTGAATCCTAA
AA sequence Show only first row Show all	>Lus10041405 pacid=23179815 polypeptide=Lus10041405 locus=Lus10041405.g ID=Lus10041405.BGIv1.0 annot-version=v1.0 MIGRGGGGIRMPYRESSLTTTTIPTECTLVVGCVTMKGLFKHKSRTPVELVQYARDLLLFVDCNSADVPKKKRDDKIAELGKVLVEMRTILFGEGQAEPN ADACSQVTQEFFREDTLRVLIGCLPKLGLGPRQIAASVITNLQKQRVQGCLVAPEYMESNLDLMEILLPGYEDADIALTYGSISRDLICHQVVAKYVLES AHMSRFFTYVQLPNFEIASVAQATFKELLTRHKSTVAEFLSNSYDWFFQEYNSQLLESKEYITRRYAIKLLGDMLLDRLNAAVMVRYVSSLDNMRILMNL FREEKKSIQMETFHVFKLFVANQSKPPEIISVLAKNKNKLLRFLAGLKTEKEDEQFEADKSLVIKEIARLEDKSQVIRETPNLEINDRPTSELDNEAES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	0	1
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	1.0	0.9211
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	2.8	0.9124
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	7.6	0.9206
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	9.3	0.9165
AT3G07210			unknown protein		Lus10025908 [exp]	14.9	0.8908
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	15.5	0.8910
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10032394 [exp]	17.3	0.8408
AT1G06930			unknown protein		Lus10009096 [exp]	17.9	0.8848
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	19.4	0.9014
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10000237 [exp]	21.6	0.8438

Compare expression of checked genes

Lus10041405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.