Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39190 878 / 0 ATATH8 Protein kinase superfamily protein (.1.2) AT5G24970 268 / 3e-78 Protein kinase superfamily protein (.1.2) AT1G79600 256 / 2e-74 Protein kinase superfamily protein (.1) AT1G71810 254 / 6e-74 Protein kinase superfamily protein (.1) AT4G31390 253 / 2e-73 Protein kinase superfamily protein (.1.2) AT3G24190 251 / 4e-72 Protein kinase superfamily protein (.1) AT3G07700 201 / 1e-54 Protein kinase superfamily protein (.1.2.3) AT5G64940 192 / 3e-51 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 130 / 9e-32 Protein kinase superfamily protein (.1) AT5G50330 115 / 5e-27 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036522 [exp] 1491 / 0 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023508 [exp] 697 / 0 AT2G39190 487 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10040390 [exp] 309 / 1e-96 AT2G39190 322 / 1e-101 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 251 / 2e-72 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020103 [exp] 246 / 2e-70 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 241 / 2e-68 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 226 / 2e-63 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10032616 [exp] 224 / 7e-61 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 224 / 1e-60 AT3G23940 1148 / 0.0 dehydratase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221000 [exp] 1084 / 0 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 255 / 3e-74 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G050700 [exp] 254 / 8e-73 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 249 / 9e-72 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 247 / 6e-71 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.002G000100 [exp] 241 / 7e-69 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 202 / 6e-55 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 197 / 4e-53 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 193 / 8e-52 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G061300 [exp] 128 / 8e-31 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01636 [flax] [poplar] APH Phosphotransferase enzyme family CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10041406 pacid=23179955 polypeptide=Lus10041406 locus=Lus10041406.g ID=Lus10041406.BGIv1.0 annot-version=v1.0 ATGGTGGGGCCGACGGCAGCTTCTGCCGTGGTGGCGTCGTCCGTGTCGACCATTCAGGCTACTGCTCTCGGAAGCAGGAAGCAGTCCCGAACGCCGACGC ATAAGGGAAAGCCTCCGCGGGAAGCGAAGGCTATAGGGAATTTCAGTCACTTCGGGGAAGTAGTGCGGAAGGATTTTGCATTCTTGAAGAAAGGAATTGG TAAGGGAATCAATTGGGCGAACGATGTTTTTAAGCTTCCGCAAGTGGCCAAGGTAGTTGATGATGTTGTCTGGATGCGGAACCTCGAGGATCCCAAAGCC GCTACTATGGAGAAGCAAACTTGGCCTCAGCCTTACTATCCAGAACTTTCTGGTGTAGATTTACTCATGGCTGACCTTCAAGCCCTGCAAACCTATGCCA GTTACTTCAGCTACTTGTCCAAGACGTGGTCGAAACCGCTTCCTGAAGTGTATGATCCGGAGGCTGTTTCTGATTACTTCAATTGCAGGCCTCATGTGGT TGCCTTCCGGCTTCTTGAGGTGTGTTCTGCCTTTGCTTCTGCAACACTACAGGTTCGGGCTTCACGTGTTAGAAAGATTCTGGGCTCAAGTCCTGATAGT GATCTCGACATGAATGGAAACACCTCACAGTACAATTTTGGAATGGTGTTAAAAGAAACGATGCTTAACTTAGGTCCCACTTTTATAAAAGTTGGTCAAT CATTGTCCACAAGACCCGACATAATCGGTTCCGAAATTTCAAAGGCTCTTTCTGGGTTGCATGATCAAATACCTCCCTTTCCTAGTACCATTGCAATGAA AATCATTGAGGAGGAGCTAGGAGCTCCAATTGAATCGTCTTTTAGCTACATATCTGAGGAACCTGTTGCTGCAGCATCATTCGGTCAGGTCTACCGTGGA CAGACTCATGATGGTCGTATTGTTGCTGTGAAAGTTCAACGTCCTGATCTCCGTCATATTGTAGTTCGAGATATCTATATACTCCGAATCGGGCTGGGGA TGTTGCAAAAGATTGCGAACAGGAAAAGTGACCTTCGACTCTATGCTGATGAGTTTGGTAAAGGGTTGGTAGAGGAATTAGATTACTCTATCGAAGCTGA CAATGCATCCAAATTCATGGAAGTTCATTCTTCTTTCACTTTTATGCGTATTCCAAGGGTTTACCGAGATTTAAGCCGGAAAAGAGTTCTGACTATGGAG TGGGTAGTTGGTGAAAGTCCAAATGATTTACTCGCTGTATCTACTTCCAATGCCAATGATAACGGTTCAGAAAGAGAGAGAACTGAAGCAAATAAGCATT TACTTGATCTGGTTAGCAAAGGTGTGGAAGCATGTCTAGTTCAACTTCTTGAAACAGGTTTGCTGCATGCAGACCCACATCCAGGAAACTTAAGATACAT TTCATCAGGACAAATAGGGTTCTTGGACTTCGGTTTACTTTGCCAAATGGAGAGGAAGCATCAATTTGCCATGCTTGCATCAATAGTACACATTGTAAAT GCTGATTGGGGGTCGCTTGTACGTTCTCTTATGGACATGGATGTAGTTAGGCCAGGAACTAATATCAGGCGTGTTACAATGGAACTAGAAGATGCCTTAG GAGAGACAGAATTCAGAGATGGAATTCCTGATATCAAGTTCAGTAGGGTTCTAGGAACGATATGGTCTGTGGCCCTCAAGTATCATTTCCGCATGCCTCC ATATTACACCCTCGTTCTACGTTCCCTTGCATCTTTGGAAGCTGATACTAGGAAAATTCTGTATTCTGTGATCCTAAACAAGAGGAAAGAGTTCCGCTGG GAGAGACTTAATCTTTTCTTAAGAGTAGCATCGACCAGGAAAATTTTAAACCGGGCGGTAGCATCAAAGAGTGAAAGGTCCATTGATTATCTGCCAAACA GATCAAATGCTGTTATTGACGCTGCACACTTGGTCTTGAAACTTTTACCATCCAAAGAGGGTGTTGTTCTTAGGAAACTTCTAATGACGGTTGATGGGAC TTCGTTAGTCCGAGGATTGGTTTCCAAGGCAGCAATGCCCTTCAGACAGCAGTTTTGCAAAATCATCGCTGATGTCATCTACCAATGGAGTGCTCAAGCT CTTGGACAACACATTCCAGCAATTAAGTACAGTAGCTCCAAGCCATCTTCCAGATCATCCATGTCACTTGCTGATTATCAAGCAATTCTTGGAGATCCAA GGCTAAAAGTGATCTTTCTAAGAATACTAGACTCTGCAAGGAAAGATCCAGTACTGATGCTTAAGTTGTGCTGGACTTCTTTTGTGACGATGGTCACTGC CTCGGCAGTCGCATGCTATCGAGTTGTGGTCTTGCTGTCTGAAGCTTTTTTGAGTTCTCTTGCTCCGAAGCAGGTGGCATTTACTGCTTGA
AA sequence Show only first row Show all	>Lus10041406 pacid=23179955 polypeptide=Lus10041406 locus=Lus10041406.g ID=Lus10041406.BGIv1.0 annot-version=v1.0 MVGPTAASAVVASSVSTIQATALGSRKQSRTPTHKGKPPREAKAIGNFSHFGEVVRKDFAFLKKGIGKGINWANDVFKLPQVAKVVDDVVWMRNLEDPKA ATMEKQTWPQPYYPELSGVDLLMADLQALQTYASYFSYLSKTWSKPLPEVYDPEAVSDYFNCRPHVVAFRLLEVCSAFASATLQVRASRVRKILGSSPDS DLDMNGNTSQYNFGMVLKETMLNLGPTFIKVGQSLSTRPDIIGSEISKALSGLHDQIPPFPSTIAMKIIEEELGAPIESSFSYISEEPVAAASFGQVYRG QTHDGRIVAVKVQRPDLRHIVVRDIYILRIGLGMLQKIANRKSDLRLYADEFGKGLVEELDYSIEADNASKFMEVHSSFTFMRIPRVYRDLSRKRVLTME WVVGESPNDLLAVSTSNANDNGSERERTEANKHLLDLVSKGVEACLVQLLETGLLHADPHPGNLRYISSGQIGFLDFGLLCQMERKHQFAMLASIVHIVN ADWGSLVRSLMDMDVVRPGTNIRRVTMELEDALGETEFRDGIPDIKFSRVLGTIWSVALKYHFRMPPYYTLVLRSLASLEADTRKILYSVILNKRKEFRW ERLNLFLRVASTRKILNRAVASKSERSIDYLPNRSNAVIDAAHLVLKLLPSKEGVVLRKLLMTVDGTSLVRGLVSKAAMPFRQQFCKIIADVIYQWSAQA LGQHIPAIKYSSSKPSSRSSMSLADYQAILGDPRLKVIFLRILDSARKDPVLMLKLCWTSFVTMVTASAVACYRVVVLLSEAFLSSLAPKQVAFTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10041406 [exp]	0	1
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	1.0	0.9442
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	5.7	0.8556
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	12.2	0.8799
AT2G04360			unknown protein		Lus10000124 [exp]	12.5	0.8190
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	13.4	0.8867
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10016009 [exp]	13.4	0.8551
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	14.6	0.8855
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	15.9	0.8503
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	19.0	0.8415
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10006454 [exp]	20.9	0.7755

Compare expression of checked genes

Lus10041406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.