Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23790 135 / 1e-36 Plant protein of unknown function (DUF936) (.1) AT1G70340 120 / 2e-31 Plant protein of unknown function (DUF936) (.1) AT1G08760 54 / 5e-08 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030619 [exp] 320 / 1e-107 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 317 / 5e-106 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 182 / 5e-54 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10013006 [exp] 177 / 7e-53 AT1G23790 300 / 6e-97 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 49 / 1e-06 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 48 / 4e-06 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038600 [exp] 124 / 2e-33 AT1G23790 285 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 126 / 4e-33 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 43 / 0.0001 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10041407 pacid=23180012 polypeptide=Lus10041407 locus=Lus10041407.g ID=Lus10041407.BGIv1.0 annot-version=v1.0 ATGGCTTGTTCAATCAGTCTAGTGATCCAGTCTCTGCCGGATTCAAAACCAGTCTACCAGTCTGCCTCTGGATTTACCTGGAAAGCTAAGCAAGCTCGGA AAGCTTTGCAGCAGAGGGAAACTGCACAGAAGCTGGCTGAACCGGCCTTGAGAGAAGCTTCTGCTACCGAAACATTAATCCAATCTTTGAAGATGTTCTC AGACATGACCAAATCAGCTAGCCCCGAATCTCCAGCCGGTTGCTTCGACAAGTTCCTCGAATTCCACGCTCGAATTTCGCAGTCTATCGACGAAATGAAC TCCATCCAGTCTGCTGCCACCAGTGTTCCTGCAACTCCGAAATCAAAACCTGGCGAAAAGAGTAAACAGATGAATCCAGAGGAAGCCTTCCCGGCGTTAA ACGAGCTCATTAGGAACTCGAGAAGGCGAACATCAACGATCTACAAGTCCCCCACAGTCCAATGTAGCAATTCAAGGTTGTCAAGATCGTCGAATGATGA GAACAAGAGACCAGCAATTACAACTGCTGCTACTCCATCGGTTTCTGGCAGCTTGAGCAGGATGATCAAGCTGAGAAAGGAGATCGAGATCGAAGCGGGG ATCTGGTTCGTCGAGTTCGTGGAGAGAACATCCGAAAGTGGAATGCAGAAGGGTAGTAGCTATAGTAGGGAGGAAGTGTCGCAGTTAGTGATGAGGAGGA TGAGGAGGAAGAGGAGGTGGACGATGGGTGACGGTGACGGATGA
AA sequence Show only first row Show all	>Lus10041407 pacid=23180012 polypeptide=Lus10041407 locus=Lus10041407.g ID=Lus10041407.BGIv1.0 annot-version=v1.0 MACSISLVIQSLPDSKPVYQSASGFTWKAKQARKALQQRETAQKLAEPALREASATETLIQSLKMFSDMTKSASPESPAGCFDKFLEFHARISQSIDEMN SIQSAATSVPATPKSKPGEKSKQMNPEEAFPALNELIRNSRRRTSTIYKSPTVQCSNSRLSRSSNDENKRPAITTAATPSVSGSLSRMIKLRKEIEIEAG IWFVEFVERTSESGMQKGSSYSREEVSQLVMRRMRRKRRWTMGDGDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23790			Plant protein of unknown funct...		Lus10041407 [exp]	0	1
AT4G04980			unknown protein		Lus10036174 [exp]	14.2	0.8176
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	14.6	0.8427
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	19.5	0.8393
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020114 [exp]	26.7	0.8305
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10034062 [exp]	28.2	0.7975
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	30.3	0.8276
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000353 [exp]	46.4	0.8062
AT1G27385			unknown protein		Lus10015781 [exp]	46.7	0.8132
AT3G23360			Protein phosphatase 2C family ...		Lus10011808 [exp]	47.1	0.7880
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	57.4	0.8092

Compare expression of checked genes

Lus10041407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.