Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07950 387 / 5e-136 rhomboid protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036521 [exp] 536 / 0 AT3G07950 428 / 4e-152 rhomboid protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220900 [exp] 459 / 2e-164 AT3G07950 352 / 3e-122 rhomboid protein-related (.1) Potri.008G041100 [exp] 443 / 3e-158 AT3G07950 350 / 2e-121 rhomboid protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF08551 [flax] [poplar] DUF1751 Eukaryotic integral membrane protein (DUF1751)
Representative CDS sequence Show only first row Show all	>Lus10041408 pacid=23179554 polypeptide=Lus10041408 locus=Lus10041408.g ID=Lus10041408.BGIv1.0 annot-version=v1.0 ATGAGTGCTCCCGCCGTAGCTGGGGGATCGAGCTTGTTCACCGGCTTTACGCGATTATGCAAGGGCTTGGCCGTGGTCCTGGTTGCCGGCCACCTTGTTG TTCAGACTTTGCCTTTCACGGTTAATTATCTTGCCCTCATTCCCGCCAGGACTATACCTTTTGCATGGAACCTCATAACAGCTGGCTACGTTGAGCAATC AATATTTGGAGTGGTGGCCAATACTTTATGCCTTCTTGTTATGGGGAAGTTGCTTGAACCGGTTTGGGGTTCCAAAGAGTTCTTGAAATTTATCTTCATA ATTAACTTCCTTACCTCAGTCTGTGTGTTCATCACTGCCATCACTTTGTATTACATAACGACTCATGAAACCTACCTTTACATGCCTATATCTGGTTTCC AAGGAGTGGTGGCCGGTTTCTTGGTTGGCATAAAGCAAATTATACCTGACCAGGGGCTATCTGTATTAAGAATAAAGGCGAAGTGGTTCCCTTCTATAAT GCTCTTGGTGGCAATTGCGGCTAGCTTGTTCACAGTTGAGTCGGCAAAATACCTCCCGACACTCATCTTTGGCACATACACGAGCTGGATATACTTGAGA TATCAACAGAGAAGACCAGAAACAATGCTAAAGGGCGACCCTAGCGACGATTTCGCCTTCTCTAGTTTCTTCCCTGATTTCCTTAGACCGGTTATCGACC CAATGGCATCGATTTTCCATCGAATGCTTTGCGGAAGAGCTCAATCTCCAAGTGAGCCGCAGGGTTACCAATTGGGAGGTACAGCACTGCCAGGATCTGA CCCAATCGAAGCATCAAGGAGGAGAGAAAAAGGAGCACGAGCACTGGAAGAAAGACTGGCAACTGAGAAGCTGGCTGCGGCACGGAGCATTGAAGACCTG AAAAAAGATGCCTCTGAGAGTGTATAG
AA sequence Show only first row Show all	>Lus10041408 pacid=23179554 polypeptide=Lus10041408 locus=Lus10041408.g ID=Lus10041408.BGIv1.0 annot-version=v1.0 MSAPAVAGGSSLFTGFTRLCKGLAVVLVAGHLVVQTLPFTVNYLALIPARTIPFAWNLITAGYVEQSIFGVVANTLCLLVMGKLLEPVWGSKEFLKFIFI INFLTSVCVFITAITLYYITTHETYLYMPISGFQGVVAGFLVGIKQIIPDQGLSVLRIKAKWFPSIMLLVAIAASLFTVESAKYLPTLIFGTYTSWIYLR YQQRRPETMLKGDPSDDFAFSSFFPDFLRPVIDPMASIFHRMLCGRAQSPSEPQGYQLGGTALPGSDPIEASRRREKGARALEERLATEKLAAARSIEDL KKDASESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	0	1
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	1.0	0.9505
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	1.4	0.9489
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	2.0	0.9342
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	3.5	0.9428
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	3.9	0.9311
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	4.7	0.9220
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006062 [exp]	6.2	0.9183
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	8.0	0.9279
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	8.4	0.9284
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	8.5	0.9284

Compare expression of checked genes

Lus10041408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.