Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53000 520 / 0 TAP46 2A phosphatase associated protein of 46 kD (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036520 [exp] 733 / 0 AT5G53000 583 / 0.0 2A phosphatase associated protein of 46 kD (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016500 [exp] 568 / 0 AT5G53000 525 / 0.0 2A phosphatase associated protein of 46 kD (.1) Potri.015G012200 [exp] 545 / 0 AT5G53000 501 / 8e-178 2A phosphatase associated protein of 46 kD (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04177 [flax] [poplar] TAP42 TAP42-like family
Representative CDS sequence Show only first row Show all	>Lus10041409 pacid=23179613 polypeptide=Lus10041409 locus=Lus10041409.g ID=Lus10041409.BGIv1.0 annot-version=v1.0 ATGGGCGAGCTGAAGATGGAGGATGTTGCGCTCCCAACGCTCTTCTCCCAAGCTCGGAACATCCATTTCAGCTCTACCGAGTCCACTGCTGATCAAGATG CGATAAGGAAAGGGTGCAAGGCGTTGGAGAAGTGCGAGGAAATGGTGAATAAGCTAGGCTTGTTTTCGGCTAATGAGACGAAAGAAGATATTGGCACCAG CAATCTTAAATACATCCTGGTACCATTTTACCTTGCTGAGTTGACTGAGAAAGTTTCTCAGGGTGATAGGATTCAAATACTTAAATCGTCCCAAGCAAAA CTCAAGGAATTCCTTTCATTCTGTGAATCGATGGAACTTGTACCAGAGGAGGAGCTGCAGGCATCAGTGCAAGGACGTTCAAATGCCTCTGTTGATCGAA GGGCTCAAAAGATTGCTAGGTTTAAGCGCCAAAAAGCTGCAGAAGCAAAGCTGCTGGAAATAAAGGAGCGGAAAGAGCGGCGTGGTCGTTCCACTAAGGC ATCTGCATTGTCTTCGCCTGTTGAAGTTGGAGAGGAAGATCTACTGGATGATGATGATGGTGAAGAAGAACGGGAGGCCTGGCTTACGACCATATCACTA GCTATCTGCAAGGCTATTGATTTGCTGGAAATGTTGAAGAAAGAAGAGGAAATGCTTTCTGCTGTCAGGGAAAGACAATTAAAGGAAGGAGATAAGGAGT TTTCTCAGGCTGTCCTGGATGAACGAGTGCATAAAGCAGAATCGTGGCATCGTGGTGCTGCGACTCGAGCACAGTATACAAAGCCTTCCGTACCAATTAC ATGTGCTACTTTTGCTCAAGATGTGCTGGAAGGACGAGCTAGTGTTTCGGAGGCACATGATCACAAGCATCAGCCAATGATATTTGGACCAGCAAGCCTC ATTAATTCGCGGCCAACTAGCGAGAGGGAAAGGATGGCAGCGCAGGTGTTCCAACCTGGTCACAGGTTGCCAACGATGAGCATAGAGGAGGCTGGGATGA AGGAGATGGAGATGATGAACAAGTGGCAAGAGAGGAATGTTAAATACATGGACGAAGCCAACTCCGCATGGTACAAGGATAACAGCATCGGTAAGCCGAG ATCAGGTGAAGAGGAAGAGGATGAAGATGACGATGCTGCGGTGGAAAAGGCAAGAGCTTGGGACGATTGGAAAGATGAAAACCCTCGTGGTGCCGGGAAC AAGAAGCTCACTCCATGCGGTTAA
AA sequence Show only first row Show all	>Lus10041409 pacid=23179613 polypeptide=Lus10041409 locus=Lus10041409.g ID=Lus10041409.BGIv1.0 annot-version=v1.0 MGELKMEDVALPTLFSQARNIHFSSTESTADQDAIRKGCKALEKCEEMVNKLGLFSANETKEDIGTSNLKYILVPFYLAELTEKVSQGDRIQILKSSQAK LKEFLSFCESMELVPEEELQASVQGRSNASVDRRAQKIARFKRQKAAEAKLLEIKERKERRGRSTKASALSSPVEVGEEDLLDDDDGEEEREAWLTTISL AICKAIDLLEMLKKEEEMLSAVRERQLKEGDKEFSQAVLDERVHKAESWHRGAATRAQYTKPSVPITCATFAQDVLEGRASVSEAHDHKHQPMIFGPASL INSRPTSERERMAAQVFQPGHRLPTMSIEEAGMKEMEMMNKWQERNVKYMDEANSAWYKDNSIGKPRSGEEEEDEDDDAAVEKARAWDDWKDENPRGAGN KKLTPCG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10041409 [exp]	0	1
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10005677 [exp]	1.4	0.9003
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	3.3	0.9052
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	6.0	0.8971
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	8.4	0.8859
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	10.4	0.8864
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10022914 [exp]	16.3	0.8677
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	17.5	0.8703
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	23.9	0.8901
AT5G22040			unknown protein		Lus10008373 [exp]	25.2	0.8809
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Lus10036032 [exp]	26.0	0.8544

Compare expression of checked genes

Lus10041409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.