Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23410 207 / 3e-67 TET5 tetraspanin5 (.1) AT3G12090 202 / 3e-65 TET6 tetraspanin6 (.1) AT3G45600 124 / 9e-35 TET3 tetraspanin3 (.1) AT4G30430 121 / 6e-34 TET9 tetraspanin9 (.1) AT5G60220 120 / 4e-33 TET4 tetraspanin4 (.1) AT5G46700 119 / 6e-33 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT2G19580 118 / 8e-33 TET2 tetraspanin2 (.1) AT2G23810 117 / 2e-32 TET8 tetraspanin8 (.1) AT4G28050 110 / 1e-29 TET7 tetraspanin7 (.1) AT1G18520 110 / 1e-29 TET11 tetraspanin11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036518 [exp] 179 / 2e-57 AT4G23410 141 / 2e-58 tetraspanin5 (.1) Lus10023338 [exp] 128 / 9e-37 AT3G45600 347 / 1e-121 tetraspanin3 (.1) Lus10038473 [exp] 129 / 2e-36 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10007998 [exp] 122 / 4e-34 AT2G19580 369 / 6e-130 tetraspanin2 (.1) Lus10001668 [exp] 119 / 4e-33 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10017336 [exp] 119 / 4e-33 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10019965 [exp] 119 / 6e-33 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10023216 [exp] 117 / 2e-32 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10040551 [exp] 116 / 8e-32 AT2G19580 364 / 3e-128 tetraspanin2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041600 [exp] 248 / 2e-83 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.010G220300 [exp] 246 / 1e-82 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.009G015100 [exp] 137 / 8e-40 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.003G093000 [exp] 132 / 2e-38 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G141400 [exp] 125 / 3e-35 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.018G099800 [exp] 122 / 2e-34 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.006G177900 [exp] 122 / 4e-34 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.006G150400 [exp] 117 / 2e-32 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.015G055700 [exp] 112 / 2e-30 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G107200 [exp] 100 / 8e-26 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10041411 pacid=23179774 polypeptide=Lus10041411 locus=Lus10041411.g ID=Lus10041411.BGIv1.0 annot-version=v1.0 ATGCTTTTTACGATCATGGCCCTCATCGCCCTGACCGTGTTCGGGTTCGTGGTCACGGGTCAGGGCGGTGGGGTCGAGGTTCCGGGGAGGCCTTACAGGG AGTATAGGCTGCAGGATTACTCTCCCTGGTTGAGGAAGAGGGTTCAGGAACCTCAGTACTGGAAGGCTGTAAGGGGCTGCATCTTGGGGTCCAAGACTTG TGATCCGCTTGCCTCTTGGACCCCTCTTGATTATGCTCAGCGTGACTTGTCCCCTGTTCAGTCAGGGTGCTGCAAGCCGCCGACGACGTGCGACTACAAC ATGGCGACGACGGTTGCGCAAGAGCAGGACTGTTACAAGTGGAACAACGCGGCGGAGATGTTGTGCTACGAGTGCGACTCGTGCAAGGCTGGCGTCTTGG AGGAAGTTCGGAGGGACTGGCGGAAGCTGACGGTCCTGAACGTGGTGGTGCTAATCATCCTCATAGCCCTTTACTCGGTGGGATGCTGCGCCTTCCGCAA CACACAGCGGGCCGAGTCCGATTACCCTTACGGCATCAACCGCATGAGCAAGATCCGTCCTCGCTGGGATTACCACTGGTAA
AA sequence Show only first row Show all	>Lus10041411 pacid=23179774 polypeptide=Lus10041411 locus=Lus10041411.g ID=Lus10041411.BGIv1.0 annot-version=v1.0 MLFTIMALIALTVFGFVVTGQGGGVEVPGRPYREYRLQDYSPWLRKRVQEPQYWKAVRGCILGSKTCDPLASWTPLDYAQRDLSPVQSGCCKPPTTCDYN MATTVAQEQDCYKWNNAAEMLCYECDSCKAGVLEEVRRDWRKLTVLNVVVLIILIALYSVGCCAFRNTQRAESDYPYGINRMSKIRPRWDYHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	0	1
AT5G19875			unknown protein		Lus10034527 [exp]	6.7	0.8962
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	6.9	0.9165
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	7.5	0.9034
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	7.5	0.8713
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	10.4	0.8975
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10017258 [exp]	10.6	0.8904
AT5G02140			Pathogenesis-related thaumatin...		Lus10003962 [exp]	13.4	0.8837
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10009472 [exp]	13.8	0.8633
					Lus10033952 [exp]	13.9	0.8925
					Lus10032860 [exp]	18.5	0.8967

Compare expression of checked genes

Lus10041411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.