Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35770 552 / 0 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G07990 535 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 522 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30810 466 / 5e-161 SCPL29 serine carboxypeptidase-like 29 (.1) AT3G02110 465 / 1e-160 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 456 / 2e-157 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 446 / 3e-153 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 426 / 6e-146 SCPL23 serine carboxypeptidase-like 23 (.1) AT5G23210 415 / 1e-140 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT1G61130 394 / 6e-133 SCPL32 serine carboxypeptidase-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040387 [exp] 541 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10023505 [exp] 536 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10015382 [exp] 474 / 2e-163 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10015489 [exp] 466 / 2e-160 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 462 / 4e-159 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010190 [exp] 402 / 7e-136 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 397 / 8e-134 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 371 / 9e-124 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10037810 [exp] 369 / 1e-122 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220200 [exp] 657 / 0 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 654 / 0 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G220100 [exp] 559 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041800 [exp] 558 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 472 / 3e-163 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.006G183200 [exp] 471 / 3e-163 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 468 / 7e-162 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.018G105700 [exp] 463 / 3e-160 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G094100 [exp] 463 / 5e-160 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.005G091700 [exp] 416 / 5e-141 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10041412 pacid=23179967 polypeptide=Lus10041412 locus=Lus10041412.g ID=Lus10041412.BGIv1.0 annot-version=v1.0 ATGGACACTCGGCTACTTTACTTCATTTTGTTCCTCACCCTCTTGCTCCCCACACCTTCAAGCACTTTGGCTGCCTCCCAGGATAGGATTCTTAGGCTGC CAGGCCAGCCACCAAATGTGAGCTTCTCCCAGTATTCAGGCTACATCACTGTCGACCCGCGAGCTGGGCGGGCCCTCTTCTTTTGGCTCGTCGAGGCTCC TACAGCAGCCCGACCTAAGTCGAGGCCGCTCGTCCTTTGGCTCAATGGCGGGCCGGGCTGTTCCTCCATCGCTTATGGAGCTTCTGAGGAGGTTGGACCT TTCCGAGTCCGGCCCGATGGAAGAAGCCTCAAGTTGAACCCTTATGCTTGGAACAAAGTGGCCAATTTGCTATTTCTTGATTCTCCGGCCGGTGTGGGAT TCTCTTATTCCAACACTTCATCTGATTTGTACGACGTTGGTGACAATAGGACAGCAAAAGATGCGTACAAGTTTTTGACAAGTTGGGTGGAGAGATATCC AGAGTACAAGCACCGGCCATTCTACATAGCTGGAGAAAGCTACGCAGGGCATTACATTCCTCAGCTGTCACAGATGATAGTACAGAGGAACGCAAGGGCT AAGAACCCCACTATCAATTTCAAAGGTTTCTTGTTAGGAAATCCAGTGATAGATGAGTACCATGACAACGTGGGAAGCCACGAGTACTGGTGGAACCATG GACTCATCTCGGACCAAACCTACAAACAACTCAAAACATTTTGTCGAAACGACTCGTTTCTGTTCCCAGGGGAGCACTGCAACGCTGCCTTGGACAGTGC TTTCGATGAGTTTGGGGACATCAATCCTTACAGCATCTACACTCCTCCTTGCCGTGATCCCGGATCCCGCCGCAAACATAATCCTCTGCCGTGGAAATTT AGAGGAAACGACCAATGTGTGGCCAAGTACACAAAAGTTTACATGAATCGTCCTGATGTCCAGAAGGCTCTCCATGCTAACCTTACCAATATTATCCCCC ATCCTTGGACTACTTGCAGCTCTGTGATTAGGAGGGAGTGGAAGGATTCCCCAAAATCGATGCTTCCTGTCTTTAAAGAGCTAATTGCAGCCAAAATCAG AATATGGGTATTCAGTGGTGATGCAGATGCAATACTGCCAGCAACAGCGACACGACATTCGATCGGAGCTCTGAATTTGCGGACCATCGTAAACTGGTCG GCTTGGTACGACGAGAAGAAGCAGGTGGGAGGGTGGAGCCAAGAGTATCAAGGATTGACCCTTGTGACTGTCAGAGGAGCAGGCCACGAAGTTCCTCTCA CTAACCCAAACCTTGCTTTTCTACTCTTTAACAATTTCCTTGCGAACCAGTCCATGCTGTATAGACTCTTGAACATCTGTCCCACCCCCAACGAACCCAC CACACAGAGACCATACAAGACTGCACGAATTGGTTCCTCCGGTGGAGCGAACTCAAAGCCACCTGCTCAGCCGCGCCCAACTGCAGCGCGTCCAATCTCT TGGCCACCGCATCGTCTGCCGGCCGTGTTGGACTCATTGTCATCGCCGGTTATTGCTGAGGATGAGATCCAAAAGAATCCCTAA
AA sequence Show only first row Show all	>Lus10041412 pacid=23179967 polypeptide=Lus10041412 locus=Lus10041412.g ID=Lus10041412.BGIv1.0 annot-version=v1.0 MDTRLLYFILFLTLLLPTPSSTLAASQDRILRLPGQPPNVSFSQYSGYITVDPRAGRALFFWLVEAPTAARPKSRPLVLWLNGGPGCSSIAYGASEEVGP FRVRPDGRSLKLNPYAWNKVANLLFLDSPAGVGFSYSNTSSDLYDVGDNRTAKDAYKFLTSWVERYPEYKHRPFYIAGESYAGHYIPQLSQMIVQRNARA KNPTINFKGFLLGNPVIDEYHDNVGSHEYWWNHGLISDQTYKQLKTFCRNDSFLFPGEHCNAALDSAFDEFGDINPYSIYTPPCRDPGSRRKHNPLPWKF RGNDQCVAKYTKVYMNRPDVQKALHANLTNIIPHPWTTCSSVIRREWKDSPKSMLPVFKELIAAKIRIWVFSGDADAILPATATRHSIGALNLRTIVNWS AWYDEKKQVGGWSQEYQGLTLVTVRGAGHEVPLTNPNLAFLLFNNFLANQSMLYRLLNICPTPNEPTTQRPYKTARIGSSGGANSKPPAQPRPTAARPIS WPPHRLPAVLDSLSSPVIAEDEIQKNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35770		SCPL28	serine carboxypeptidase-like 2...		Lus10041412 [exp]	0	1
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	8.2	0.8495
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	9.2	0.8457
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	16.7	0.8468
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	21.4	0.8467
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	21.9	0.8359
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	25.2	0.8419
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	25.3	0.8361
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	25.9	0.8413
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	26.5	0.8352
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10030306 [exp]	28.3	0.8427

Compare expression of checked genes

Lus10041412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.