Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25030 367 / 1e-126 unknown protein AT5G45410 316 / 1e-106 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036514 [exp] 548 / 0 AT4G25030 420 / 1e-147 unknown protein Lus10041415 [exp] 542 / 0 AT4G25030 408 / 5e-143 unknown protein Lus10036513 [exp] 523 / 0 AT4G25030 413 / 8e-145 unknown protein Lus10033276 [exp] 301 / 8e-101 AT4G25030 348 / 4e-119 unknown protein Lus10034730 [exp] 291 / 3e-97 AT4G25030 336 / 6e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219900 [exp] 423 / 6e-149 AT4G25030 355 / 5e-122 unknown protein Potri.008G042100 [exp] 424 / 9e-149 AT4G25030 355 / 1e-121 unknown protein Potri.001G131300 [exp] 325 / 7e-110 AT5G45410 337 / 9e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041414 pacid=23179536 polypeptide=Lus10041414 locus=Lus10041414.g ID=Lus10041414.BGIv1.0 annot-version=v1.0 ATGGACTTCAGAGGGCTAAACGAGGATCCTGCATCTTCTGAGCTTGGCATCCACAGGTGTCCGTTTTTGAGAAATATCAATGAGCCAACAAACTTCTCCT TCTCGTCGGCCATGCCTTTTCCTATACCTGGCCGAACGGGCAAAGGTCCTATTTTTGAAGATGGCCCTAATTTTGATTCAACATTCAGGCTATTCCATGG GCAAGATGGAGTAATCCCACTTTCGGAAAGGTCATTCCCGCTTTCTGAGAGAATTGAGCCTCATCATGCTGTGCCTGCGTTTAATCCGTTTGCTGCAAAG GCAGCCACAATCAGTCTCTCATCTTTTGGCCCTGGTGGACCCTTTAGCTTTGATGCATTTTCTAAGAAGTGGAACAATCAGAACAAGAATTCAAAATCAT CGAAGAAAGGCTCTTCTTCACAGGGAGGAAAGTCTGAACATGAGTCGATGAGCGATGAATGGCTGAGACATGGGAACTGCCCAATTGCAAAGTCATATCG GGCAGTCAGCAGTGTCCTGCCTCTTGTTGCAAAAGCTCTGCAGCCTCCTCCAGGGATGAAATTCAAGTGCCCGCCTGCAATAGTTGCAGCCAGAGCAGCT ATATCCCGGACTGCGTTTGCGAAGAATCTAAGGCCACAACCCTTACCTGAAAAAGTAATGGTGATTGGGATGCTAGGCATGGCTGCAAATGTTCCTCTAG GAGTATGGAGAGAACACACTGAAAAATTCTCGCTCTCGTGGTTTACAGCTGTGCATGCTGCAGTTCCGTTCATAGGAATGCTAAGGAAATCCATACTGAT GCCCAAGTCAGCGATGGCGTTCACCATTGCAGCATCTATACTAGGTCAGGTTATTGGTTCCAGGGCGGAACGGTACCGCCTCAAGGCAAAGGCAAAAGAA GCTGTGAAGGAAATGCCCACTCTCATTGAAGCAAGTGCACCATCCTTAGAACCCATTGCTCTGAAGACTGGGCATGGTGGCCATCTGATAGAGTACCCAG TTGTCCTTCATTCTCCCACAGCTGCAACAAATGTAGTCTGCTAA
AA sequence Show only first row Show all	>Lus10041414 pacid=23179536 polypeptide=Lus10041414 locus=Lus10041414.g ID=Lus10041414.BGIv1.0 annot-version=v1.0 MDFRGLNEDPASSELGIHRCPFLRNINEPTNFSFSSAMPFPIPGRTGKGPIFEDGPNFDSTFRLFHGQDGVIPLSERSFPLSERIEPHHAVPAFNPFAAK AATISLSSFGPGGPFSFDAFSKKWNNQNKNSKSSKKGSSSQGGKSEHESMSDEWLRHGNCPIAKSYRAVSSVLPLVAKALQPPPGMKFKCPPAIVAARAA ISRTAFAKNLRPQPLPEKVMVIGMLGMAANVPLGVWREHTEKFSLSWFTAVHAAVPFIGMLRKSILMPKSAMAFTIAASILGQVIGSRAERYRLKAKAKE AVKEMPTLIEASAPSLEPIALKTGHGGHLIEYPVVLHSPTAATNVVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25030			unknown protein		Lus10041414 [exp]	0	1
					Lus10008052 [exp]	1.7	0.9170
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	2.2	0.9080
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	4.5	0.8948
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	4.9	0.8918
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	5.3	0.8732
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	8.4	0.9169
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	9.2	0.9106
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	10.4	0.9103
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	10.9	0.8885
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	11.0	0.8898

Compare expression of checked genes

Lus10041414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.