Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25030 374 / 9e-130 unknown protein AT5G45410 312 / 3e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036513 [exp] 565 / 0 AT4G25030 413 / 8e-145 unknown protein Lus10041414 [exp] 563 / 0 AT4G25030 424 / 4e-149 unknown protein Lus10036514 [exp] 559 / 0 AT4G25030 420 / 1e-147 unknown protein Lus10033276 [exp] 318 / 3e-107 AT4G25030 348 / 4e-119 unknown protein Lus10034730 [exp] 306 / 4e-103 AT4G25030 336 / 6e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219900 [exp] 435 / 1e-153 AT4G25030 355 / 5e-122 unknown protein Potri.008G042100 [exp] 433 / 2e-152 AT4G25030 355 / 1e-121 unknown protein Potri.001G131300 [exp] 320 / 2e-108 AT5G45410 337 / 9e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041415 pacid=23180041 polypeptide=Lus10041415 locus=Lus10041415.g ID=Lus10041415.BGIv1.0 annot-version=v1.0 ATGGAGTTCAGAGGGCTAAATGAGGATTCTGCATCTTCCGAGCTTGGCATCTTTAGGTGTCCATTTTTACGAAATATCAATGAGCCGACAAGCTTTTACT TCTCCTCGGCCATGCCTTTTCCTATGCCTGGGCACATGGGCAAAGGCCCTATTTTTGAAGATGGCCCTAATTTTGATTCGACATTCAGGCTATTCCATGG GCAAGATGGAGTAGTCCCACTCTCGGAAAGGTCATTCCCGCTCTCTGAGAGAATTGAGCCTCTTCATGCCTTGCCTGCGTTTAACCCGCTAGCATCAAAG GCAGCCACCATCAGTCTCTCGTCTTTTGGTGGACCCTTTAGCTTTGATGCCTTTTCTAAGAAGTGGAACAATCAGAACAAGAATTCCAAATCTTCGAAGA AAGGCTCGTCTTCGCAGGGAGGAAAGTCTGAACATGAGTCGATGAGTGATGAATGGCTGAGACATGGGAACTGCCCAATTGCAAAGTCATATCGGGCAGT CAGCAGTGTCCTGCCTCTTGTTGCAAAAGCTCTGCAGCCTCCTCCAGGGATGAAATTCAAGTGCCCGCCTGCAATAGTTGCAGCCAGAGCAGCTATATCC CGGACTGCGTTTGCGAAGAATCTAAGGCCACAACCCTTACCTGAAAAGGTAATGGTTATTGGGATGCTAGGCATGGCTGCAAATGTTCCTCTAGGAGTAT GGAGAGAACACACTGAAAAATTCTCGCTCTCGTGGTTTACAGCTGTCCACGCTGCAGTTCCGTTCATAGGAATGCTAAGGAAATCCATACTGATGCCCAA GTCAGCGATGGCGTTCACCATCGCAGCATCTATACTAGGTCAGGTTATTGGTTCCAGGGCAGAACGCTACCGCCTCAAGGCGAAGGCAAACGAAGCTCTG AAGGAAATGGCTCCCCTCATTGAAGCTAGTGAACCATCCTTGGAATCCATTGCTCTGAAAACTGGGCATGGTGGGCATCTGATAGAGTACCCAGTGGTCC TTCATTCTCCCACAGCTGCAACAAATGTAATCTGCTAA
AA sequence Show only first row Show all	>Lus10041415 pacid=23180041 polypeptide=Lus10041415 locus=Lus10041415.g ID=Lus10041415.BGIv1.0 annot-version=v1.0 MEFRGLNEDSASSELGIFRCPFLRNINEPTSFYFSSAMPFPMPGHMGKGPIFEDGPNFDSTFRLFHGQDGVVPLSERSFPLSERIEPLHALPAFNPLASK AATISLSSFGGPFSFDAFSKKWNNQNKNSKSSKKGSSSQGGKSEHESMSDEWLRHGNCPIAKSYRAVSSVLPLVAKALQPPPGMKFKCPPAIVAARAAIS RTAFAKNLRPQPLPEKVMVIGMLGMAANVPLGVWREHTEKFSLSWFTAVHAAVPFIGMLRKSILMPKSAMAFTIAASILGQVIGSRAERYRLKAKANEAL KEMAPLIEASEPSLESIALKTGHGGHLIEYPVVLHSPTAATNVIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25030			unknown protein		Lus10041415 [exp]	0	1
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	1.0	0.9185
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	1.4	0.8953
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	2.8	0.8812
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	3.5	0.8829
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	8.1	0.8496
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10013193 [exp]	8.4	0.7406
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	9.2	0.8214
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	10.7	0.8471
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	14.0	0.8168
AT3G57450			unknown protein		Lus10042063 [exp]	14.0	0.8311

Compare expression of checked genes

Lus10041415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.