Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30230 50 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036511 [exp] 399 / 2e-142 AT4G30230 61 / 8e-11 unknown protein Lus10023495 [exp] 142 / 1e-41 ND 48 / 1e-06 Lus10040376 [exp] 134 / 7e-37 AT5G03030 184 / 6e-58 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043300 [exp] 80 / 2e-17 AT4G30230 50 / 4e-07 unknown protein Potri.010G218300 [exp] 69 / 1e-13 AT4G30230 48 / 2e-06 unknown protein Potri.006G168400 [exp] 53 / 3e-08 AT4G30230 94 / 8e-23 unknown protein Potri.018G092800 [exp] 52 / 1e-07 AT4G30230 98 / 4e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041416 pacid=23179735 polypeptide=Lus10041416 locus=Lus10041416.g ID=Lus10041416.BGIv1.0 annot-version=v1.0 ATGGATACTGTGAACCTCCTTGATCCTCAACAACATCAACCCTCTTATGATGATGACGTTGATGCTGACAAGGACGACATCCTTTCCCTCCGTGATCTCC CTCTAACAACTAGCAGCAGAAATTGGACTAAGCCTGATAGGGATCCAGTCGCTGATCATCATCAGGAAGATGGGTTCGAGTTCTTCAGCGGGGAATTCAA CCCCTACTCCTTTTCTCATGCTGAAGAGCAAGAGGAGGAGGGTGACATCATTTTCTGTGGGAAGATCATTCCATACAGAGCTTCCAAATCAGAGAATAGC AATAGCAACTTCCGCGGGAGGTCATCTTCTCTTAATAAACCAAGAGGAGCAACTGCTGTTTCATCACTATACGGCAGAGATTATTCTACTACTCATCATC ATCAAGTAAAGAGGTTCTGGTCCTTACCAGTATCAGCAGCAGCAAGCAATGGACTCCGAGACTCGTTGAGGAGCAGTGATTCTCCGGCGAAGAGGTTAGC GCCTACGTCGAAATCAAGATGGTATGTGCTGGCGTTTGGAGTGGAGAAGATTCCAGTTAAGATGGAGCTTCACGATATGAAATTAAGACAGAGCAAGAAC TTCAACGGTCAGATGTTTCAACCGAATCAACAAGTGGTCAAGCAGAGTAGCAACACTAGTAGGAAGGGTTCCTTGTGGGGATTTCTTGGGATCTTGGGCT GCAACAGAGAAGAAGCAAGTAATATGGTTAAAGCCTCATTTGTTTGCATTCCAAATGTCTGA
AA sequence Show only first row Show all	>Lus10041416 pacid=23179735 polypeptide=Lus10041416 locus=Lus10041416.g ID=Lus10041416.BGIv1.0 annot-version=v1.0 MDTVNLLDPQQHQPSYDDDVDADKDDILSLRDLPLTTSSRNWTKPDRDPVADHHQEDGFEFFSGEFNPYSFSHAEEQEEEGDIIFCGKIIPYRASKSENS NSNFRGRSSSLNKPRGATAVSSLYGRDYSTTHHHQVKRFWSLPVSAAASNGLRDSLRSSDSPAKRLAPTSKSRWYVLAFGVEKIPVKMELHDMKLRQSKN FNGQMFQPNQQVVKQSSNTSRKGSLWGFLGILGCNREEASNMVKASFVCIPNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30230			unknown protein		Lus10041416 [exp]	0	1
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	1.4	0.9396
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10024363 [exp]	1.7	0.9397
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	12.4	0.9045
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10014822 [exp]	14.8	0.9076
AT1G78550			2-oxoglutarate (2OG) and Fe(II...		Lus10011987 [exp]	14.9	0.8494
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	17.3	0.9062
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	18.6	0.9003
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	22.8	0.8975
AT4G01575			serine protease inhibitor, Kaz...		Lus10010286 [exp]	23.6	0.9192
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	24.7	0.9061

Compare expression of checked genes

Lus10041416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.