Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55510 485 / 1e-162 RBL REBELOTE, Noc2p family (.1) AT2G18220 339 / 2e-104 Noc2p family (.1) AT5G57250 110 / 2e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 59 / 1e-08 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 58 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22960 58 / 3e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 56 / 8e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12300 56 / 1e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 56 / 1e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 56 / 1e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036510 [exp] 1081 / 0 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020167 [exp] 991 / 0 AT3G55510 459 / 3e-154 REBELOTE, Noc2p family (.1) Lus10026968 [exp] 538 / 0 AT3G55510 336 / 1e-110 REBELOTE, Noc2p family (.1) Lus10025551 [exp] 293 / 1e-86 AT2G18220 831 / 0.0 Noc2p family (.1) Lus10027010 [exp] 259 / 3e-75 AT2G18220 760 / 0.0 Noc2p family (.1) Lus10010410 [exp] 61 / 6e-09 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024666 [exp] 60 / 6e-09 AT5G18950 263 / 6e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 58 / 3e-08 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013077 [exp] 57 / 4e-08 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043400 [exp] 700 / 0 AT3G55510 591 / 0.0 REBELOTE, Noc2p family (.1) Potri.001G012800 [exp] 316 / 1e-95 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.003G213601 [exp] 171 / 4e-47 AT2G18220 416 / 4e-140 Noc2p family (.1) Potri.018G143800 [exp] 165 / 1e-41 AT5G57250 825 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G144300 [exp] 68 / 2e-11 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 61 / 3e-09 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 61 / 3e-09 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.001G457300 [exp] 60 / 5e-09 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G090800 [exp] 57 / 3e-08 AT1G66345 499 / 1e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050300 [exp] 56 / 1e-07 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [flax] [poplar] Noc2 Noc2p family CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041417 pacid=23179675 polypeptide=Lus10041417 locus=Lus10041417.g ID=Lus10041417.BGIv1.0 annot-version=v1.0 ATGGGAAAGCTAGGAAAGAATGCGAGAAAGTTCGCAAAGAAGAATCTTCAGTCAGTAATGAAAAGGCAGAGGAAGATAAAGTCCGTTTTCAAGAAAAGAG CTACGAAGAGTAAGAGCTTGGTTGAACTTTCAGACACTCAAGTAGAGGATGTTGGAGCTATATCATTTGATGTGATATTCAATGAGAATGACAGTGATAT GGGGGGAGATGATTCTGGAAGTGATGGATATTTATCAGAGGATGAAGGCTGTATTGGCATAGATGAAGGCAAGAGGGATATTAACCTAAAAGCATCTAGT GATTGTTCTGCTGCAGACAATAGCAAGGATACTGGTGTATCTGACCAGAACCGAATTGTTTTCATGGAGCTTGCAAAGCAGAAGAAAAAATTGGAAAGAT TGAAAGAAAAGCAGTTTTCGGGTGAAGATGAAAGTGACGATGATAATAGGCGGTCAACAGATGAAGATGGCGCACTATTAGGAATTGGAAAGTGCTTGAG TAGTTCTGCTGTTGGTTCATTGTGTCAACTTGTTAAGGAGCAATATGATACGCCTTCCCTTATACGGATTTTGAATGCATATAGAGCGGGAAGCCATTAT GGGTCTAAATCTTTTGGTGTTCCGGGAGACACAGAAGGTCTTGGCAATATTATGATATTTGTGCTTCAGGAAGCAAATGAGGTGTTCCGGAAATTTTTGG GTATTTCAAGTTCCACTCAAAAGAAGGAGGTCATTTTGGAATTGAAAAATACATCAAAATGGAAAACCCTGAGGCCTCTCATTAAGTTGTACTTGAGAAG TACAATCTTTCTTCTCAACGAAGTTACTGACTCTGAGATATTAGCTTTTCTTATGAAGCGACTAAGGACATCTGTAATCTTCTTTGCTGCCTTTCCATCA TTACTGCAGAGGCTGATCAAGATCTCTGTTCATCTTTGGGCAACAGGTAAAGGGGATCTGTCAGTGCAGTCATTCCTTGCCATACAAGATGTGGCTGTTG TGTTCAACTCGGATTTGTTTGACACATGCTTCGTCAAGGCATACAAGACCATTATTGGCCACTGCAAATTCGTAGATCCTGCCATTTTTGAACACCTTCA GTTTCTTAAGAAGTCCTTCATTGAGCTGTGTTCTCAAGATATGCAGAAATCAATGCGAATGGCAATTCTTTCAATTAGAGAACTTGCTAAGAGTTTACAG TTGGGTTTACGAACTAGGCAAAAGGATGCAGTAGAGAAGATTTGCAGCTGGCAGTATGTTAATTGCATTGATCTATGGATAATAAATGGAGTAGCAGTCC TCTTTCCAGGGCAAAGATACTTACCTTTGAGAGTTAAAAGTGTTCAGTGGTTGAATCTTCTCTCCAGTTCCTGCTGTACATTCATCCCTGTTGCATCGCT GGCACTTGATATTTTGGAATACAAAATGGACAAAGAGAATCAGAAATCTGGAAACGATTTCGACTTGTCATCTGAAGTTAAGTTACCAAAACACTGGATG AAATCGCGGAACTTCCAGGAAGCGTGTATTTTTTCTACCCTTGAATTGCTTGCTGTGCACTTTGCTCAGTGGGGCTGCCACATATCTTTCCCTGAATTGG CTACTATCCCACTGATCCATTTGAGGAAATTCCATGAAAGGACGAGCATTGAGAGTTTTCGCCGAATGGTGAAACGTTTTATAGATCAGGTGGAGCAAAA TGTTGAGTTTGTGCGCAAGAAGAGAGATGAAGTTGCTTTCTCACCAAAAGACGAGGAGGCAGCTGCGTCATTTCTCCAGCTGGAAAAATCAGGTGGCAAC CTTCCATTTATTCAGTACTACAAGAGTCTCACAGGAAGGGTTGCGTCGACGGATCTGCTTATGACTAAAAACTTGAGCTTGGTCACTCCAAGTTCTACTC AAACGAGGGTTAGTGATGTCATTAATGGTTATTGTCAAAGGGGTGACATGGAGAAGGCTCTCAGGTTCTTTTATGAGTGTCAGTTGAAAGGTACATCGCC TGATTTCCTGGGCTTTCTTTTTTTGATAAGGGGTTTATGTACCAAGGGTAGAATGGAAGAGGCAAGAAGCATATTGAGAGAAATGCTTAAGTCGCAACCT GTACTAGAGGGTAGCATCAAAGAAGCAGTTATGGTACTCGATGAAGTTAGTGCTATGTTTTATCCGCATAGTAAAAGGTATGGGCTTCATCATGAACAAG AGGATCTAGGGCAACTTACAGAATCCATGGCATTCAGTCCAGTTGCTCATGAGGGGAGAGTTGATCTGAAGGTTCCATATTATGATATGGTTGGAGTGGA TAGCACTTTTCAGTATAGTTATGATTTGAAAGGAGGATCTGAATCTAATTCCTTCGATTCATATTCTTCTTTAATTGTATCACTCTGCTCAAAAGGTGAG CTTGGTCAAGCTAATAGATTAGCAGAGGAGATGCTGACTAATTTTGTTGGAAAATGA
AA sequence Show only first row Show all	>Lus10041417 pacid=23179675 polypeptide=Lus10041417 locus=Lus10041417.g ID=Lus10041417.BGIv1.0 annot-version=v1.0 MGKLGKNARKFAKKNLQSVMKRQRKIKSVFKKRATKSKSLVELSDTQVEDVGAISFDVIFNENDSDMGGDDSGSDGYLSEDEGCIGIDEGKRDINLKASS DCSAADNSKDTGVSDQNRIVFMELAKQKKKLERLKEKQFSGEDESDDDNRRSTDEDGALLGIGKCLSSSAVGSLCQLVKEQYDTPSLIRILNAYRAGSHY GSKSFGVPGDTEGLGNIMIFVLQEANEVFRKFLGISSSTQKKEVILELKNTSKWKTLRPLIKLYLRSTIFLLNEVTDSEILAFLMKRLRTSVIFFAAFPS LLQRLIKISVHLWATGKGDLSVQSFLAIQDVAVVFNSDLFDTCFVKAYKTIIGHCKFVDPAIFEHLQFLKKSFIELCSQDMQKSMRMAILSIRELAKSLQ LGLRTRQKDAVEKICSWQYVNCIDLWIINGVAVLFPGQRYLPLRVKSVQWLNLLSSSCCTFIPVASLALDILEYKMDKENQKSGNDFDLSSEVKLPKHWM KSRNFQEACIFSTLELLAVHFAQWGCHISFPELATIPLIHLRKFHERTSIESFRRMVKRFIDQVEQNVEFVRKKRDEVAFSPKDEEAAASFLQLEKSGGN LPFIQYYKSLTGRVASTDLLMTKNLSLVTPSSTQTRVSDVINGYCQRGDMEKALRFFYECQLKGTSPDFLGFLFLIRGLCTKGRMEEARSILREMLKSQP VLEGSIKEAVMVLDEVSAMFYPHSKRYGLHHEQEDLGQLTESMAFSPVAHEGRVDLKVPYYDMVGVDSTFQYSYDLKGGSESNSFDSYSSLIVSLCSKGE LGQANRLAEEMLTNFVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	0	1
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	4.4	0.8351
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	8.9	0.8097
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	9.2	0.8186
AT5G13830			FtsJ-like methyltransferase fa...		Lus10040283 [exp]	9.7	0.7751
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	10.5	0.8148
AT1G41880			Ribosomal protein L35Ae family...		Lus10040235 [exp]	12.3	0.8115
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	15.0	0.7335
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	15.2	0.7548
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	17.0	0.7982
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	19.1	0.7996

Compare expression of checked genes

Lus10041417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.