Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26430 411 / 2e-138 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT4G19600 120 / 2e-28 CYCT1;4 Cyclin family protein (.1) AT5G45190 118 / 1e-27 Cyclin family protein (.1.2) AT1G35440 100 / 2e-23 CYCT1;1 cyclin T1;1 (.1) AT4G19560 90 / 1e-18 CYCT1;2 Cyclin family protein (.1) AT1G27630 75 / 2e-14 CYCT1;3 cyclin T 1;3 (.1) AT5G48640 59 / 3e-09 Cyclin family protein (.1) AT5G48630 53 / 2e-07 Cyclin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036509 [exp] 539 / 0 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3) Lus10040640 [exp] 123 / 2e-29 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10021927 [exp] 93 / 9e-20 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10041213 [exp] 82 / 2e-16 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10036192 [exp] 66 / 6e-11 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10003151 [exp] 64 / 7e-11 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 64 / 8e-11 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2) Lus10038329 [exp] 59 / 7e-09 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043600 [exp] 519 / 4e-180 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.003G148800 [exp] 124 / 2e-29 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 118 / 3e-28 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.005G097400 [exp] 119 / 5e-28 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 119 / 8e-28 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 108 / 3e-24 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.008G150500 [exp] 100 / 1e-22 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.010G090400 [exp] 91 / 9e-20 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.014G194900 [exp] 61 / 6e-10 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.002G246800 [exp] 58 / 4e-09 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041418 pacid=23179720 polypeptide=Lus10041418 locus=Lus10041418.g ID=Lus10041418.BGIv1.0 annot-version=v1.0 ATGAGATTGCAACCAGCCCTCGACGACAACCGAGAGGAAGAGCTCTCCTTCATGCTACCGGTCGAACCGATTCCCCAACCCGAAAAATCCATCCCCTGCC CGGCTCCAAAATGTCCCCCGACGACAGGCCATTCGCGAGACGACTCGTTCGAGTTTTCCTCAATTGGTTCCCCACCCTCTGAACCGGACCAAGAGATAAT CTTCTGTGGAAGAATCCTAACCGGACAGAGAATGGATCCCAATCATGATGCTTACAGTTACGACGACATCAACAACTATAATCATCGACAACGCAAGGTA GTGCACATCGCCCCGGCTGATTTCGATCACTGCCTCTACAGCGATCCTCCGTTGGCTAATACGACGCCGTTGAGGCCGCTGCTGATGGGCCGCAATGCGG GCCGGTCCAAATCGTTTAACCACAGGCATGACTCCAAAACGGCGCTGTTGTCGAAGCCCAAGTTGGGGCAGAGCAAGAGCTTTTGCTACTTGTCCAAGCA AGTGGGAGGAGGCGGGGGAGGGTCCACTAAAGTGTCACCCAAGTCGGAGGAGGAACGTGGTGGTGAAGTGAAGAAGTCGGTGGTCGGAGAGGGAAACACA GTTAGTTCTGGGCGTGGGTTTGGACGGTCTAAGAGTTTTAGAAACGCTGCCGGATCCTCAATCCGGAACAGGCGAAGAGAGCCAACGGTTGATTGTGAAC TCTGGAAGATCGGGATAATGATATACACAGCTATCGACAACTTCTACCTTACGGATGAGCAGCTGCAGAGCTCTCCATCGAGGAAGGATGGAATTGATGA AGAGACTGAAACTTCTCTTAGAAGATACGGTTGTGATCTCATTCAAGAAAGTGGAATTCTGCTTAGATTACCTCAAGCTGTGATGGCAACTGGTCAGGTC CTGTTTCATCGCTTCTTTTGCAAGAAATCATTTGCTAAGTTCAATGTCAAGAAAGTTGCAGCAGGTTGTGTTTGGCTTGCATCTAAACTAGAGGAGAGTC CTAGAAGAGCAAGGCATGTTATCATTGTTTTTCACAGGATGGAATGCCGCAGGGAGAGTTTGCCCATTGAATTTTTGGACATGAGTTCTAAGAAATTTGC CGAACTAAAGGTGGAGTTAAGTAGAACTGAAAGACACATATTGAAGGAAATGGGTTTTGTTTGTCATGTTGAACACCCACACAAATTTATCTCTAACTAT CTGGCCACCCTTGGAGCAGCATCCCCGGAACTGAGCCAAGAAGCATGGAATCTGGCTAATGATAGATTCTTTAAATGCTTGTTCATACACAACTGCTCTT TTTGCAATCTCATGTTCTGCCCCGCCGAGAACCCCCCTTGGTGGAAAGCTTTTGATGCTGATAAATTGAGCATCGATGAAGTTTGCAGAGTGCTAGCTCA CCTTTACAGCCTTCCCAAAGCTCAATACATGTCAGTTTGTAAGGATGGTGATTTTTCTTTCACTAACAGGCCCTTGGATTTACCGTCACAACCAACTTTA AAGGATGCTCCGCAAACTAGCTCACCAGCAAATAATGATGCTTCAAAGGCTGCTCCTACTTTGCTCAATGTAGAATCTGGGGGATCCAAGGGAACATTGA TAAAAGCAGCATCGGACAAGCTCAAAGACTCTAAGAAGGGTGATGACGAGTCAAAGCGTGAGGAACCCATTCCAAGATCCAAGTCTGACCACAAAATAGA TGCAAACAATGAGAGAAGTAAGGAGAAGGACAGAGACAGGGAGCGAGAAAGAGAAAGGGATAGGGGAAGAGAATCTGACAGAATGAAGGTTGACCGTGAC AGGGGAAGAGAATCTGACAGGGAAAGGGATCGAGAAGAGAGTGAAAGGGACAGAGATAAGAACAGAGATAGAGGTCATCGTTCGAAAGATAGAGGAAAAG ATTCAGGGCATTTAGAGAAATCAAGGCATCATTCATCACGTGATCGGGAGTACCACAGTTCCACGTATTCTTCAAGGGACAAGGACCGGCATAAGCACCA CTCGTACTCGTGA
AA sequence Show only first row Show all	>Lus10041418 pacid=23179720 polypeptide=Lus10041418 locus=Lus10041418.g ID=Lus10041418.BGIv1.0 annot-version=v1.0 MRLQPALDDNREEELSFMLPVEPIPQPEKSIPCPAPKCPPTTGHSRDDSFEFSSIGSPPSEPDQEIIFCGRILTGQRMDPNHDAYSYDDINNYNHRQRKV VHIAPADFDHCLYSDPPLANTTPLRPLLMGRNAGRSKSFNHRHDSKTALLSKPKLGQSKSFCYLSKQVGGGGGGSTKVSPKSEEERGGEVKKSVVGEGNT VSSGRGFGRSKSFRNAAGSSIRNRRREPTVDCELWKIGIMIYTAIDNFYLTDEQLQSSPSRKDGIDEETETSLRRYGCDLIQESGILLRLPQAVMATGQV LFHRFFCKKSFAKFNVKKVAAGCVWLASKLEESPRRARHVIIVFHRMECRRESLPIEFLDMSSKKFAELKVELSRTERHILKEMGFVCHVEHPHKFISNY LATLGAASPELSQEAWNLANDRFFKCLFIHNCSFCNLMFCPAENPPWWKAFDADKLSIDEVCRVLAHLYSLPKAQYMSVCKDGDFSFTNRPLDLPSQPTL KDAPQTSSPANNDASKAAPTLLNVESGGSKGTLIKAASDKLKDSKKGDDESKREEPIPRSKSDHKIDANNERSKEKDRDRERERERDRGRESDRMKVDRD RGRESDRERDREESERDRDKNRDRGHRSKDRGKDSGHLEKSRHHSSRDREYHSSTYSSRDKDRHKHHSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	0	1
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	1.4	0.9526
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	1.7	0.9525
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	2.0	0.9584
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	3.2	0.9348
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	3.7	0.9393
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	4.5	0.9464
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	5.3	0.9324
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	6.6	0.9477
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10040914 [exp]	6.6	0.9149
AT3G52220			unknown protein		Lus10039101 [exp]	6.9	0.9339

Compare expression of checked genes

Lus10041418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.