Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 290 / 7e-94 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 267 / 2e-85 IQD3 IQ-domain 3 (.1) AT3G09710 238 / 8e-74 IQD1 IQ-domain 1 (.1.2) AT2G26410 185 / 3e-53 IQD4 IQ-domain 4 (.1) AT2G33990 120 / 2e-31 IQD9 IQ-domain 9 (.1) AT3G22190 115 / 3e-28 IQD5 IQ-domain 5 (.1.2) AT3G15050 106 / 4e-26 IQD10 IQ-domain 10 (.1) AT2G26180 108 / 5e-26 IQD6 IQ-domain 6 (.1) AT3G59690 104 / 4e-24 IQD13 IQ-domain 13 (.1) AT1G72670 101 / 2e-23 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036508 [exp] 625 / 0 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 295 / 3e-96 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 297 / 2e-95 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 213 / 2e-66 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 112 / 3e-27 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 112 / 7e-27 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10027059 [exp] 111 / 2e-26 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10015300 [exp] 108 / 2e-26 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10015068 [exp] 106 / 2e-26 AT5G03040 202 / 4e-63 IQ-domain 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G218100 [exp] 468 / 2e-163 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 347 / 8e-116 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 345 / 4e-115 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 123 / 4e-31 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.004G053000 [exp] 119 / 2e-30 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.006G226600 [exp] 121 / 3e-30 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.019G095700 [exp] 119 / 3e-29 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.009G015800 [exp] 117 / 1e-28 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.011G063200 [exp] 114 / 1e-28 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.011G096500 [exp] 113 / 2e-28 AT3G15050 262 / 2e-87 IQ-domain 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10041419 pacid=23179609 polypeptide=Lus10041419 locus=Lus10041419.g ID=Lus10041419.BGIv1.0 annot-version=v1.0 ATGCCTATTCTGTGGCACTTGCAACCGCTGCCGCCTGCTGCAGCTGAGGCAGCTGTTGCAGCTGCCCAAGCTGCAGCTGAGGTCGTTCGACTTACAACCG CAGTTCGTAGCTCTGGAAAATCTAAGGAAGAGATAGCAGCAATCAAGATACAGACTGCATTTAGAGGTTACATGGCTAGAAGAGCGCTACGGGCATTGAG AGGGTTGGTGAGATTGAAAACGTTGTTGCAAGGGCAATCTGTGAAAAGACAAGCAAATTCAACGTTACGAGCCATGCAGACTCTTGCTCGGTTGCAGTCT CAAATCCGGGTAAGGAGAATCAGGATGGCAGAGGAAAACCAGTCTCTCCAGCGACAGATCCAACATAAACATGAAAAGGAGCTTGAGAGGTTAACGTCTT CTGTTATTGGAGCAGAGTGGGATGACAGCATGCAATCAAAACAACAAATTGAAGCCAGCTTACTACACAGGCAAGAAGCTGCAGTTAGGAGAGAAAGAGC ATTGGCTTATGCATACACTCATCAGCAAACATGGAAGAAGTCGTCGAAAAACGGGACAGCCACATTCATGGACCCAAGCAATCCACACTGGGGTTGGAGT TGGTTAGAGAGATGGATGGCAGCAAGGCCATGGGAGAGCACAAGTGGAGTGGATAGCAACAATGACCAGGCATCTCTCAAGAGCTCAATAAGCCGAACAG TATCTCTCGGTGAAATCAGCAGAAGCTACTCTCGTCGGGACCTACACTACAACAACAAGGCTTCCCCAAGTGGCCAAAGATCAAGCAGACCTCCAAGTCG TCAGTCACCTTCTACTCCGGGTTCAAAGGCTCCATCTTTCGCATCAGTAACTGGGAAAATGAAAGGACCGAGCCCTAGGGGGAGCAGTAGTACTTGGGGC GGCGATGATGATGATGATTCGAGGAGCATGTTTAGCGTCCAGTCTGAGCGATACAGGAGGAGGCACAGCATAGCGGGGTCATCGGTCAGAGATGATGAGA GCCTTGGAAGCTCACCTTCAGTGCCAAGTTTCTTGGGGGTTACACAGTCTGCAAAGGCCAAGTCGCGGTTTTCGGGTCCAATGGGGTTGGACAAGAATGG TGTACCGGATAAAGCATCTGTTGCATCAGCAAAGAAGCGTCTCACCTTCTCTCCTTCGTCGGCTGGACTGAGGAGACATTCTGGTCCTCCTAAGGTCGAT GCCACTCGGGTGAAGAAGCATGCAGCAGATGGGGAAAGGGCAATGTAG
AA sequence Show only first row Show all	>Lus10041419 pacid=23179609 polypeptide=Lus10041419 locus=Lus10041419.g ID=Lus10041419.BGIv1.0 annot-version=v1.0 MPILWHLQPLPPAAAEAAVAAAQAAAEVVRLTTAVRSSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKTLLQGQSVKRQANSTLRAMQTLARLQS QIRVRRIRMAEENQSLQRQIQHKHEKELERLTSSVIGAEWDDSMQSKQQIEASLLHRQEAAVRRERALAYAYTHQQTWKKSSKNGTATFMDPSNPHWGWS WLERWMAARPWESTSGVDSNNDQASLKSSISRTVSLGEISRSYSRRDLHYNNKASPSGQRSSRPPSRQSPSTPGSKAPSFASVTGKMKGPSPRGSSSTWG GDDDDDSRSMFSVQSERYRRRHSIAGSSVRDDESLGSSPSVPSFLGVTQSAKAKSRFSGPMGLDKNGVPDKASVASAKKRLTFSPSSAGLRRHSGPPKVD ATRVKKHAADGERAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	0	1
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	2.0	0.8032
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	2.4	0.7730
AT2G12462			unknown protein		Lus10001679 [exp]	2.4	0.7893
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	3.7	0.7645
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	4.0	0.8094
AT3G54880			unknown protein		Lus10038690 [exp]	4.9	0.7458
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	14.9	0.6798
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	17.5	0.7121
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	17.9	0.7305
AT5G50090			unknown protein		Lus10042139 [exp]	19.7	0.7162

Compare expression of checked genes

Lus10041419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.