Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35795 172 / 2e-56 Chaperone DnaJ-domain superfamily protein (.1) AT5G03030 165 / 1e-53 Chaperone DnaJ-domain superfamily protein (.1) AT3G09700 162 / 1e-52 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040376 [exp] 179 / 1e-55 AT5G03030 184 / 6e-58 Chaperone DnaJ-domain superfamily protein (.1) Lus10036507 [exp] 162 / 5e-52 AT2G35795 163 / 3e-53 Chaperone DnaJ-domain superfamily protein (.1) Lus10023494 [exp] 142 / 6e-45 AT5G03030 135 / 3e-43 Chaperone DnaJ-domain superfamily protein (.1) Lus10015065 [exp] 113 / 1e-33 AT2G35795 118 / 3e-36 Chaperone DnaJ-domain superfamily protein (.1) Lus10019915 [exp] 123 / 2e-33 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026485 [exp] 110 / 2e-30 AT1G09080 124 / 2e-36 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10042891 [exp] 40 / 0.0003 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 40 / 0.0003 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 39 / 0.0008 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043500 [exp] 174 / 3e-57 AT2G35795 179 / 4e-60 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G131200 [exp] 171 / 5e-56 AT2G35795 195 / 2e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G038800 [exp] 145 / 8e-46 AT2G35795 160 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10041420 pacid=23179658 polypeptide=Lus10041420 locus=Lus10041420.g ID=Lus10041420.BGIv1.0 annot-version=v1.0 ATGGTAATCGAAGCTTTAGTCTCTTTCGATCGAGAGTTCAGTCCTTTTTTTAACGTTTTCACTTCCATTTTCACTTCTTGGGCTGGGTCCGAACGGAAAC CTTTGATTAAGAAGGCTACACCTTTCTTGGCTGGAGTTGCAGTTGCAGCTGCTGCTCTTGCAGGAAGATACGGAATCCAGGCATGGCAAGCATTCAAGGC TCGTCCACCGAAAATGCGTAGATTCTACGATGGTGGATTCCAGCCTAAGATGACTAGGAGAGAGGCAGCTCTTATCCTTGGTCTGAGGGAAAGTGCGACA GCAGAGAAGGTGAAGGAGGCGCATAGAAGAGTAATGGTAGCAAACCATCCAGATGCAGGTGGTAGCCATTACTTAGCTTCCAAGATCAATGAAGCCAAAG ATGTGATGCTAGGAAAGACTAAGGGGACTGGCTCTGCTTTCTGA
AA sequence Show only first row Show all	>Lus10041420 pacid=23179658 polypeptide=Lus10041420 locus=Lus10041420.g ID=Lus10041420.BGIv1.0 annot-version=v1.0 MVIEALVSFDREFSPFFNVFTSIFTSWAGSERKPLIKKATPFLAGVAVAAAALAGRYGIQAWQAFKARPPKMRRFYDGGFQPKMTRREAALILGLRESAT AEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKGTGSAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	0	1
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	1.0	0.9060
					Lus10021499 [exp]	2.8	0.8662
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	3.5	0.9003
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	4.2	0.8932
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	8.4	0.8546
					Lus10019733 [exp]	8.6	0.7857
AT2G31130			unknown protein		Lus10013926 [exp]	9.5	0.8362
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10009353 [exp]	9.8	0.8425
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	11.5	0.8551
AT1G17030			unknown protein		Lus10024442 [exp]	11.5	0.8290

Compare expression of checked genes

Lus10041420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.