Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16880 631 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G63220 446 / 2e-147 unknown protein AT5G39710 300 / 1e-87 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 286 / 3e-84 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64100 286 / 2e-83 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G64320 280 / 1e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 274 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 276 / 7e-79 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 270 / 2e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 270 / 4e-77 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036506 [exp] 1457 / 0 AT2G16880 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036505 [exp] 607 / 0 AT5G63220 442 / 1e-156 unknown protein Lus10040371 [exp] 558 / 0 AT5G63220 432 / 9e-153 unknown protein Lus10023490 [exp] 555 / 0 AT5G63220 429 / 8e-152 unknown protein Lus10027916 [exp] 299 / 4e-87 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 293 / 4e-85 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 289 / 7e-84 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 287 / 9e-83 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 286 / 2e-82 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217600 [exp] 880 / 0 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G044100 [exp] 501 / 1e-168 AT5G63220 462 / 6e-165 unknown protein Potri.010G217400 [exp] 498 / 1e-167 AT5G63220 464 / 9e-166 unknown protein Potri.009G105600 [exp] 294 / 2e-85 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 289 / 5e-84 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 290 / 6e-84 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 288 / 3e-83 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 283 / 2e-82 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 277 / 7e-81 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G021200 [exp] 273 / 1e-79 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04190 [flax] [poplar] DUF410 Protein of unknown function (DUF410) CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041421 pacid=23179592 polypeptide=Lus10041421 locus=Lus10041421.g ID=Lus10041421.BGIv1.0 annot-version=v1.0 ATGTCGCGGGAAAGAAGTAGAAGAGTTGCGCTCCCTCCTGTCCAAGAGAATGTCGATAAATTGGCCAAGGTGATAAAGGATGGTAACTTTTATGGAGCTC AACAGATGTACAAGTCCATCAGTGCCAGATATGTATCGGCTCAGAGATTTTCTGAAGCTATGGATCTTCTTCACTCGGGAGCCAGCCTTCAGTTGGAAAG TGGCCAGGTAACTTGCGGGTCAGAGCTTGCTGTAATGTTTGTGGAGATACTTGTTAAAGGAAAGGTCCAGTACGATGATGATACCCTTGATCGTGTCAGG ACAATCTACAAACTGTTTCCACAGATTCCTGTGCCACAACACCTAGGCGAGGAGGATGATGTTCACCAACTCTCTGAAGCACTTGCTGCTGCTAAAACAA GAGTGGAGTGTTGCGCATCATTCTTGAGAGCTGCAATAAAGTGGTCTGCAGAGTTCGGACCCCATAGAAGTGGGAGCCCACAACTACACGTTATGCTAGC AGACTACCTATATTCTGAGTCCCCTGAACTGGACATGGCAAGAGTAACTCATCATTTTGTGAAAGGAGACGACCCACAAAAGTTCGCGGCCATTTTAGTT AGTTTTATGGGCAAGGACATGGCAAGAGTAACTCATCATTTTGTGAAAGGAGACGAGCCACAAAAGTTCGCCTCCATTTTAGTTAGTTTTATGGGCAAGT GTTATCCCGGTGAAGACGATTTGGCAATTGCAAGGGCCATTCTAATGTACTTATCCATGGGCAACATGAGGGATGCTAATTTTTTGCTGGGTGAAGTAAA GAAGCAGGTGGAAGCTAAGAAACTTGAGTTCCCACAATCAGACTTGATTCATTTCATCTCTTATCTTTTGCAAACTTTGCAGAGAGATGCATACCCACTT TTTAGTATGTTGAGATCGACATACAAGCCGAGCATAGACAGAGAACCTGCATTCAACGAGTGGCTAGATGAAATTGGGGAGGTTTTCTACGGAGTACAAC GCAGGAATCCGCTGCAAGGAATGTTTGGAGACATTTTCAAGGTTGTACGCTACAAAACATCAACAATTCTAGCTGCTCGCGAGCGGTTTTGTTTGTTAGC AACTCTAGCAGCAGCAAAAACCTGGCTAATGGAAGGCGCGACGGGGAAGCCTCCACCAGCTCCGGTAGCGTCAGCAACCTCGGCGCTCGTCGAAGTCTTG ACGAAGATCCTTATCTCCGAGAAAGAGCCGCTTCAGAAGCTAAGCTCCTACATCCCTCACATTTCCACCAATTCCAACCTTCTCTTGTCGCTTCTTTCCT CCAAATCCTTAGCCCGAATGCCTGCTACTCTCATCGCCTTGCTCAGGTGGTCGCAGTCACATCTTCCCTCCACATTGGGCCGATCACCGCTCCCTCTGCT CGCCGTTATTCCTTCCCTCATCGCCCACCACAACTTCGACGACGCCAAAACCCTATTGACATCCTTTATCGCCACTGATAAGCAGAATACGCTTCACAAC CACATCCTCCACCCTGACAGTAGAACTCCGCTCTCCAGGGCTGTTTATGATCTGTCTATTGGAGCTTATGTTGCAGCAGGTAGGCCTCATCATGCCGCCA ATATCTTCAAGAAGATGAAGCGCCTTCGCCTCAAGCCTAATTTGTTAACTTGTAACACTTTGCTGAATGCTCTGGTGAGATATCCGTCTTTACATGCAGT TTCCTTGTCAATGACCGTTTTGGTAGATGCGATTCGTCTTGGTGTTAAGGTTAACACCAACAGTTTCAATATTGTTGTAAAGGGGTGTTGTTTAGAAAGC AAGTTTGAAGAGGCACTGGAGCTTGTAGATAAAATGGAGGATTATGGGTGTTCACCCGACAATATCACGTACAACACCATACTTGATGGGATGTGTAAGA AGGGGAAGCTAAGTGAGGCTAGGAATTTGCTGCTGGACATGAAAAGTAAGGACTTGTTTCCGGACAGGAATACATTTAACATTCTCATCTCTGGGTATTG CAAACTAGGGCTGTTGAAGGAGGCAGGAAATGTGCTTGAGTTGATGACAATGAATAAAGTCTCTCCAGATATGTGGTCATATAACATGTTGATTGATGGA CTTTGTAAAGTGGGCAGAACCAGTGAGGCATTTAAGTTAAGGGATGAAATGGAGAAGCTGAAGTTGTTTCCAGATGTCGTTACTTATAATACCTTAATTA ACGGGTGTTTCAAATTCGGGAATAATGTAGAAGCATTTCGTTTAGTTGAAGACATGGAAGAGAAGGGACTAAAGCCAACTGCTGTTACCCATAATACACT GGTTAAATGGTTTGTTAAGGAAGGAAAGATGGACGAAGCAGCAAAAGCTGTTAGAAAGATGGAAGAAAGTGGGTTTTCACCAGATTGTGTTACTTACAAT ACTCTGATAGCTGGCTACTGCAATACAGGCAAGATGGATGAAGCATTTAGGGTGATGCATGATATGAATAAGAAACCACTGACGATGGATAGCATCACCC TTAACACAGTTCTCCATGCTCTTTGTCTGGAGAAGAAGCTTGATGAGGCATATGACTTACTTTGTAGTGCCAGGATACGAGGTTACTTGGTTGATGAGGT TAGTTATGGTACTCTAATAAATGGATTTTCCAAGAATGAACAGTTTCCTAAAGCCTTAAAGCTGTGGGATGAGATGAAGGACAAAAAGATCATTCCAAGT GTCTTCACCTATAATACCATGATAGCAGCGTTTTGCCGCACTGGGAAGACTGACAACGCAATAGATTTACTGAATGAACTCTTAGGAAATGGGTTGTTTC CAGATGAAACTACCAACAATACCATTATACATGGATACTGCTGGGAAAACCAAATTGAGAAGGCGTTTCAGTTCCATAACAAAATGGTTGACAATTCTTT CAAACCTGATGTGTTCACTTGTAACATTCTTCTTCGTGGTCTTTCTACTGGAGGTATGCTTGATAAGGCTCTTAAACTTTTCCATACATGGATGTCAAAG GGGAAACAAGTTGACTTAGTTTCCTACAATACCGTTATCTCAAGCCTGTGTAGAGTAAGGAGATTTGACGAAGCATTTACTCTTTTGGATGACATGGTAG AGAAGGGACTGGATCCTGATTGCTATACATATAATGCCATCATCGGTGGTCTAACTGATGCAGGTAGGATTGATGATTTTGAGGATTTCGTCTCAAAACG ACTTAAGAAGGATCATGATTTTGAGGATTTCGTCTCCAAACGACTTAAGAAGGATCATGTAAAAGCTCTGTCTTTACAATTGGACAGGAGACAGGATGAG GGTAACATCAAGACCTGTCTCGAAATCGACCAAAGTTCCATGTCTTACTCTGAGAAGATAAGTGAGTTATGTGCTGAAAGGAAATACAAGGACGCACTTA AACATTTTCAAGAATCTAGAGAAAAGAGTATCATGCTACAGAAATCGACTTATATTCATTTAATGAGTGGACTTATTAGAAGGAGAAAAAGAACATCAGA AGCAGCGACACTGTCATAG
AA sequence Show only first row Show all	>Lus10041421 pacid=23179592 polypeptide=Lus10041421 locus=Lus10041421.g ID=Lus10041421.BGIv1.0 annot-version=v1.0 MSRERSRRVALPPVQENVDKLAKVIKDGNFYGAQQMYKSISARYVSAQRFSEAMDLLHSGASLQLESGQVTCGSELAVMFVEILVKGKVQYDDDTLDRVR TIYKLFPQIPVPQHLGEEDDVHQLSEALAAAKTRVECCASFLRAAIKWSAEFGPHRSGSPQLHVMLADYLYSESPELDMARVTHHFVKGDDPQKFAAILV SFMGKDMARVTHHFVKGDEPQKFASILVSFMGKCYPGEDDLAIARAILMYLSMGNMRDANFLLGEVKKQVEAKKLEFPQSDLIHFISYLLQTLQRDAYPL FSMLRSTYKPSIDREPAFNEWLDEIGEVFYGVQRRNPLQGMFGDIFKVVRYKTSTILAARERFCLLATLAAAKTWLMEGATGKPPPAPVASATSALVEVL TKILISEKEPLQKLSSYIPHISTNSNLLLSLLSSKSLARMPATLIALLRWSQSHLPSTLGRSPLPLLAVIPSLIAHHNFDDAKTLLTSFIATDKQNTLHN HILHPDSRTPLSRAVYDLSIGAYVAAGRPHHAANIFKKMKRLRLKPNLLTCNTLLNALVRYPSLHAVSLSMTVLVDAIRLGVKVNTNSFNIVVKGCCLES KFEEALELVDKMEDYGCSPDNITYNTILDGMCKKGKLSEARNLLLDMKSKDLFPDRNTFNILISGYCKLGLLKEAGNVLELMTMNKVSPDMWSYNMLIDG LCKVGRTSEAFKLRDEMEKLKLFPDVVTYNTLINGCFKFGNNVEAFRLVEDMEEKGLKPTAVTHNTLVKWFVKEGKMDEAAKAVRKMEESGFSPDCVTYN TLIAGYCNTGKMDEAFRVMHDMNKKPLTMDSITLNTVLHALCLEKKLDEAYDLLCSARIRGYLVDEVSYGTLINGFSKNEQFPKALKLWDEMKDKKIIPS VFTYNTMIAAFCRTGKTDNAIDLLNELLGNGLFPDETTNNTIIHGYCWENQIEKAFQFHNKMVDNSFKPDVFTCNILLRGLSTGGMLDKALKLFHTWMSK GKQVDLVSYNTVISSLCRVRRFDEAFTLLDDMVEKGLDPDCYTYNAIIGGLTDAGRIDDFEDFVSKRLKKDHDFEDFVSKRLKKDHVKALSLQLDRRQDE GNIKTCLEIDQSSMSYSEKISELCAERKYKDALKHFQESREKSIMLQKSTYIHLMSGLIRRRKRTSEAATLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	0	1
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10006870 [exp]	2.8	0.8196
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10026809 [exp]	3.9	0.8259
AT3G12590			unknown protein		Lus10001698 [exp]	4.0	0.8285
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	4.5	0.8129
AT5G58190		ECT10	evolutionarily conserved C-ter...		Lus10027582 [exp]	5.3	0.8211
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	6.5	0.8239
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	7.3	0.8157
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	9.8	0.8268
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	9.8	0.8284
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	10.2	0.8048

Compare expression of checked genes

Lus10041421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.