Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54770 154 / 1e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G76460 146 / 3e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 144 / 7e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22910 141 / 9e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G22330 131 / 1e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G33470 129 / 2e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G46780 129 / 2e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G78260 126 / 1e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G53680 100 / 9e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G11412 99 / 2e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036503 [exp] 329 / 2e-114 AT3G54770 156 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002684 [exp] 135 / 2e-37 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030202 [exp] 134 / 2e-37 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039151 [exp] 100 / 5e-25 AT1G33470 182 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043016 [exp] 77 / 7e-16 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10032516 [exp] 77 / 9e-16 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10023485 [exp] 73 / 3e-15 AT3G54770 71 / 6e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 74 / 1e-14 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 74 / 1e-14 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G044700 [exp] 204 / 3e-65 AT3G54770 234 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G216800 [exp] 202 / 1e-64 AT3G54770 216 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G094400 [exp] 148 / 3e-43 AT1G33470 257 / 3e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.019G068400 [exp] 146 / 1e-42 AT1G33470 246 / 7e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G179100 [exp] 138 / 5e-39 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G256700 [exp] 136 / 1e-38 AT1G76460 335 / 5e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G004600 [exp] 135 / 3e-38 AT1G76460 377 / 9e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G098100 [exp] 134 / 1e-37 AT1G78260 164 / 5e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G105101 [exp] 132 / 2e-36 AT2G46780 252 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G022100 [exp] 124 / 5e-34 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10041423 pacid=23179634 polypeptide=Lus10041423 locus=Lus10041423.g ID=Lus10041423.BGIv1.0 annot-version=v1.0 ATGAACAGCAGCAGTACTGATCATTATATTAACGGCAGCTCCACCGCCGCCGGGCAGTTTGGAGACACAACGCTGACCAAAGTCTTCGTCGGAGGCTTGG CATGGGAGACTCCTAAGGAGGCCTTGCGGGACCACTTCGACAAGTACGGCGAAATCTTGGAGGCTGTCATCATCTCCGATAAGCTCTCCGGCAGATCCAA GGGCTACGGCTTCGTCACGTTCAAGGAAGCAGAAGCGGCCAACAACGCGTGCGAGGACGCCACGCCGGTCATCAACGGCCGCCGCGCTAACTGCAACCTT GCTTCCCTTGGTGCTCGCCGGACTCCCAGGTCTTCTACGACTCACGTCCCCGCGGCCGCCACTCCTAACAATTACCACCGTAATCATCACCGTCAACACG TGGGAGGGAGGGCCACGTCAGCAAATAATTATAATCAGCAGCAGCAGGTGCAGTGGTACTATCCAGCGACCTCACCTTCTTTCCCACACCACCACCACCC CATTCCATTCTACGGGTACAGTCCGGCTTACATGGGAACCGATATGACCTACAATAATCAGAAGTTGAGCTACGGATCGTCGACGTCGTACATGGCTCAT AATGTGATGCCTGCTCAGATGTACAATCAGGCGGCGGTGTACCCAGCAGCATTATTCTACCATCAATCCCATTCCATGGGACTTCCTTCCTCCGCCGCAC ACATCTACTCACCGCCGTCCGGCCAACGCCCCGCGATGGTCTCAAAACCTGATTCAATGGTGGCTCCTCCTCCTTCCTCCGGTGGCGGTGGAGCAGTTGA GAAGCTTTAA
AA sequence Show only first row Show all	>Lus10041423 pacid=23179634 polypeptide=Lus10041423 locus=Lus10041423.g ID=Lus10041423.BGIv1.0 annot-version=v1.0 MNSSSTDHYINGSSTAAGQFGDTTLTKVFVGGLAWETPKEALRDHFDKYGEILEAVIISDKLSGRSKGYGFVTFKEAEAANNACEDATPVINGRRANCNL ASLGARRTPRSSTTHVPAAATPNNYHRNHHRQHVGGRATSANNYNQQQQVQWYYPATSPSFPHHHHPIPFYGYSPAYMGTDMTYNNQKLSYGSSTSYMAH NVMPAQMYNQAAVYPAALFYHQSHSMGLPSSAAHIYSPPSGQRPAMVSKPDSMVAPPPSSGGGGAVEKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	0	1
AT1G06980			unknown protein		Lus10042244 [exp]	1.0	0.9743
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	2.4	0.9701
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10020875 [exp]	3.2	0.9406
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	3.9	0.9641
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	6.0	0.9601
AT1G24160			unknown protein		Lus10003514 [exp]	7.4	0.9042
AT1G06980			unknown protein		Lus10026407 [exp]	8.8	0.9476
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	10.1	0.9053
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	11.0	0.9475
					Lus10038634 [exp]	11.2	0.9361

Compare expression of checked genes

Lus10041423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.