Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49290 88 / 3e-20 unknown protein AT5G13620 81 / 1e-17 unknown protein AT3G45200 70 / 9e-14 unknown protein AT1G64870 67 / 8e-13 unknown protein AT5G11220 51 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036502 [exp] 290 / 2e-100 AT1G49290 84 / 1e-19 unknown protein Lus10002022 [exp] 69 / 3e-13 AT1G64870 241 / 3e-78 unknown protein Lus10041678 [exp] 68 / 5e-13 AT1G64870 237 / 6e-77 unknown protein Lus10021560 [exp] 66 / 3e-12 AT1G49290 125 / 4e-33 unknown protein Lus10009296 [exp] 63 / 2e-11 AT1G64870 235 / 3e-76 unknown protein Lus10017168 [exp] 62 / 9e-11 AT5G13620 125 / 6e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216400 [exp] 109 / 6e-28 AT1G64870 167 / 3e-49 unknown protein Potri.008G045000 [exp] 104 / 4e-26 AT5G13620 172 / 9e-51 unknown protein Potri.006G252800 [exp] 74 / 3e-15 AT1G64870 261 / 6e-87 unknown protein Potri.001G155600 [exp] 71 / 3e-14 AT5G13620 92 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041424 pacid=23179965 polypeptide=Lus10041424 locus=Lus10041424.g ID=Lus10041424.BGIv1.0 annot-version=v1.0 ATGGACTTGTCGGAATTTCTAAATTCCGGCGGTGTCTATGATAAGGCCGTGCCCATTGTCACCCAACAAGAGCTGAAGGAATTCCACCGCATCGACCGTG TGCTTTACGCACGACTGGTCATGGACCTGGGTCGCGACCTGGACGAGTCGGTGAGAGTGGTGGCAATGTGCTTGTTCTTGGAAAGATCCAATTACGCGCA CACCATGGTACAGATTATGGCCGAATCGACCGACTACTTCGTCAATTCACTCGCCAACGAGCTTGTACTCTGCATGCAGTGCATCGACAAAGACCCAGCG GACCCATTCTTGACCCGGTCGGTCCAAGAAATCCCTCTGCTCACCAGCATTACCAACCGCCAAGTATCTCTTCGCTATTTCGTCGAGAATCGTGACCTGG TCATCAAAGAACTGTTGAGGATCATGACGGAGGTCTGTTACAGAGCTTTCGACGACTTGTATAGGACCGCTGTTGTGGGCAGAATGGTTGCTGCACAACC TCAACCACCACCACCAACACCGATGACTCGTGGAATGTATCATGGACCGAACTCGAGTGGGTCGTGGAACATGCAACGATACGAGGATGCCAGCATCAGG GAGCAATTGGAAAGAGAGCCACCAAGAGGGTATATGGCTATGCTGCTAGGTCTTGATGGAGACACCAACATTGATGATATGGAGTTTAATGTGCGAATGG TAAATCTGCAGACAGACACTCCTAATACTAGTAATAGTACTGGTGCCGGCGGACGAGGAAATTAA
AA sequence Show only first row Show all	>Lus10041424 pacid=23179965 polypeptide=Lus10041424 locus=Lus10041424.g ID=Lus10041424.BGIv1.0 annot-version=v1.0 MDLSEFLNSGGVYDKAVPIVTQQELKEFHRIDRVLYARLVMDLGRDLDESVRVVAMCLFLERSNYAHTMVQIMAESTDYFVNSLANELVLCMQCIDKDPA DPFLTRSVQEIPLLTSITNRQVSLRYFVENRDLVIKELLRIMTEVCYRAFDDLYRTAVVGRMVAAQPQPPPPTPMTRGMYHGPNSSGSWNMQRYEDASIR EQLEREPPRGYMAMLLGLDGDTNIDDMEFNVRMVNLQTDTPNTSNSTGAGGRGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49290			unknown protein		Lus10041424 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	4.6	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	6.5	1.0000
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	7.3	0.9305
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	7.9	1.0000
					Lus10024141 [exp]	9.2	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	10.2	1.0000
					Lus10013255 [exp]	11.2	1.0000
					Lus10013259 [exp]	12.1	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	13.0	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	13.7	1.0000

Compare expression of checked genes

Lus10041424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.