Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55020 877 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 808 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 652 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 169 / 1e-45 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 102 / 4e-23 PAM1 plant adhesion molecule 1 (.1) AT3G02460 93 / 5e-20 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 54 / 3e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 51 / 3e-06 RabGAP/TBC domain-containing protein (.1.2) AT5G53570 50 / 5e-06 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 49 / 2e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040349 [exp] 1049 / 0 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 1015 / 0 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10036500 [exp] 724 / 0 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10014020 [exp] 655 / 0 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036501 [exp] 318 / 2e-102 AT3G55020 141 / 2e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10012363 [exp] 175 / 7e-48 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 174 / 8e-48 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10003047 [exp] 99 / 5e-22 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 97 / 2e-21 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215000 [exp] 1022 / 0 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 995 / 0 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G133400 [exp] 723 / 0 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 171 / 2e-46 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 169 / 1e-45 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.004G106700 [exp] 96 / 5e-21 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 93 / 4e-20 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.007G134200 [exp] 60 / 3e-09 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G316700 [exp] 56 / 7e-08 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G127500 [exp] 54 / 5e-07 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10041425 pacid=23179890 polypeptide=Lus10041425 locus=Lus10041425.g ID=Lus10041425.BGIv1.0 annot-version=v1.0 ATGGATGGAAAGTTGATAAAAAATGTTGGTCTTCTGGGCAGGGATGCGTATGGATTTGCAGTCAGGCCGCAACATGTCCAGAGATACAGAGAATATGCTA ATATCTATAAGGAAGAAGAGGAAGAAAGGTCTGATAGATGGAACACTTTCTTGGACCGGTTGGCCAATTCTGCCCAACTGCCAGCAAATGATTCGTCCTT GAAAGAACCCGGGTCCTTGACTACTGAAGCAATAGAGGAGGAGGTAGATGATAACTTACTGAATGGGATCGATGGAGTCAATCTGAGTGATGGGAACCGT TGCTCTGATGTCTCACATGACGGTTTCACAGAAAAGGAGGAGAAACAGACCACAGCTAATAGAAGAATACATAAGATCCAAATTTGGACAGAGACTAGAC CATCTCTTCGAGTCATTGAAGATATGATGAGTGTCCGTGTCAAGAAGAAAGTCAATCAATTCAAGGAGCAGCAAGATGATAAGAATGAGAAGCAAGTCTC TATAGTTGAAGATGTTAAATCACCAAAAGGAGTGACAGAGGGAGATTCAGAGGATGAGTTTTATGATGTGGAGCGGTCAGATCCCAGTCCTGATGTTCCT TCTGTTGAGAATGTCGTGGTACCAGCAACAACAGCCCATCAAGATGATTTGTCTTCTTGGAAAGAAGAGCTGGAAGTCCTTGTTCGTGGAGGAGTACCAA TGGCACTTAGAGGGGAGCTCTGGCAAGCATTTGTTGGTGTCAAGGCACGGCGAACGGATAAATATTATCAAGAATTGCTCGCTTCAGAATGTAATCCAGA AAATCATGTAGATGAAATATCAGACAACGATACTAAAAGTGTGCCAAGAGACCCTGCATCAACGGAGAAGTGGAAAGGGCAGATTGAGAAGGATTTACCC CGTACTTTTCCTGGTCATCCTGCGTTGGATAATGATGGCAGAAATGCACTGAGACGGTTACTTACAGCTTATGCACGACACAACCCTTCAGTTGGATATT GTCAGGCCATGAATTTCTTTGCTGCTCTTTTACTACTACTGATGCCGGAAGAAAATGCCTTCTGGACATTGATGGGCCTTCTTGATGATTATTTCGATGG ATATTACTCTGAAGAAATGATAGAGTCTCAGGTTGACCAACTAGTTTTCGAGGAGCTTGTCCGTGAAAGATTTCCTAAACTTGTCAATCATCTGGACTAC TTGGGAGTGCAGGTTGCATGGGTTACTGGACCATGGTTCCTTTCCATCTTTATGAATATGCTTCCCTGGGAAAGTGTTCTTCGAGTATGGGATGTGCTTC TTTTTGAAGGAAACCGTGTCATGTTACTCAGGACAGCACTTGCTTTAATGGAGTTATATGGCCCTGCATTAGTTACAACAAAGGATGCTGGAGATGCAGT TACTTTGTTGCAGTCGCTGGCCAGTTCAACATTTGATAGCAGTCAACTTGTACTAACTGCTTCCATGGGTTTCCAAAATGTTAACGAAGCACGATTACGG GAGTTGAGTGATAAGCATCGACCAGCAGTTATGGCTGCGCTTGAAGAGAGAACCAAGGGAATTCAAGCTTGGAGAGATTCTAAAGGGTTGGCCTCGAAGC TGTATAATTTCAAGCATGATCCTAAATCAATGTTGGTAGAAGGAAGAATGCAAACATCTGGTGACTTATCCCGTTCAGAGTCTGGATCTACTAATTCAGA TGATGTTCTTATTAGTCTGACAGAGAATGGAGAGATGGATAGTGCTCCAGATCTTCAAGAACAGGTAGTCTGGTTGAAGGTTGAATTGTGCAAGTTACTA GAGGAGAAACGATCTGCTCTACTGAGAGCGGACGAATTGGAGACAGCTTTGATGGAGATGGTCAAACAGGATAACCGACGGCAACTGCGCGCCAGGGTGT TGATGAGGGTGGAGCAAGAGCAAAAAGTAACAGAAGATGCTCGTAGATATGCGGAGCAGGATGCATCAGCTCAGAGATATGCTTGCCAAGTGCTTCAGGA GAAGTATGAAGAGGCTATGGCATCACTTGGTGAAATGGAGAAACGAGTGGTTATGGCAGAATCAATGTTGGAGGCAACGTTACAATATCAGTCTGGTCAA CTGAAAAAACAGCTGTCTTCTCCCAGAGTTCAAGACCCAGATAAATTGCAACGTGTCAACAGCAATGAAGACTCCGCAAGAAAGTCTGGTTTATTTGGAT TCGGATGGCGCGACAAAAATAAGGGGAAGGCTGCTGCCAGTGCTACTAATGGTGAAGAAGGTGGCGGCGGCGGCAGTGGTAATCTCGAGAATGGCAAACC GCCGGCCAATGAAGAACAAACGCCGCCTACTTCCAATCAAAATGGTTCCCCTCTTCAAGACAAATGA
AA sequence Show only first row Show all	>Lus10041425 pacid=23179890 polypeptide=Lus10041425 locus=Lus10041425.g ID=Lus10041425.BGIv1.0 annot-version=v1.0 MDGKLIKNVGLLGRDAYGFAVRPQHVQRYREYANIYKEEEEERSDRWNTFLDRLANSAQLPANDSSLKEPGSLTTEAIEEEVDDNLLNGIDGVNLSDGNR CSDVSHDGFTEKEEKQTTANRRIHKIQIWTETRPSLRVIEDMMSVRVKKKVNQFKEQQDDKNEKQVSIVEDVKSPKGVTEGDSEDEFYDVERSDPSPDVP SVENVVVPATTAHQDDLSSWKEELEVLVRGGVPMALRGELWQAFVGVKARRTDKYYQELLASECNPENHVDEISDNDTKSVPRDPASTEKWKGQIEKDLP RTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWTLMGLLDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDY LGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLLFEGNRVMLLRTALALMELYGPALVTTKDAGDAVTLLQSLASSTFDSSQLVLTASMGFQNVNEARLR ELSDKHRPAVMAALEERTKGIQAWRDSKGLASKLYNFKHDPKSMLVEGRMQTSGDLSRSESGSTNSDDVLISLTENGEMDSAPDLQEQVVWLKVELCKLL EEKRSALLRADELETALMEMVKQDNRRQLRARVLMRVEQEQKVTEDARRYAEQDASAQRYACQVLQEKYEEAMASLGEMEKRVVMAESMLEATLQYQSGQ LKKQLSSPRVQDPDKLQRVNSNEDSARKSGLFGFGWRDKNKGKAAASATNGEEGGGGGSGNLENGKPPANEEQTPPTSNQNGSPLQDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	0	1
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	1.0	0.8731
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	3.2	0.8507
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	3.3	0.8506
AT3G48820			Glycosyltransferase family 29 ...		Lus10032547 [exp]	5.3	0.8467
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	5.3	0.8554
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008957 [exp]	10.1	0.8080
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	10.7	0.8597
AT5G49880			mitotic checkpoint family prot...		Lus10024456 [exp]	12.5	0.8470
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10037653 [exp]	12.6	0.8461
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	14.3	0.8438

Compare expression of checked genes

Lus10041425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.