Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 567 / 0 Protein kinase superfamily protein (.1.2) AT5G02800 555 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 538 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G07870 504 / 7e-179 Protein kinase superfamily protein (.1.2) AT2G28590 491 / 1e-173 Protein kinase superfamily protein (.1) AT3G20530 476 / 9e-169 Protein kinase superfamily protein (.1) AT3G07070 463 / 4e-163 Protein kinase superfamily protein (.1) AT3G24790 461 / 5e-163 Protein kinase superfamily protein (.1) AT1G20650 455 / 2e-160 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G13190 446 / 1e-156 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036499 [exp] 698 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 618 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 610 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 574 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 572 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 543 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 531 / 0 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 530 / 0 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 477 / 2e-168 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215100 [exp] 598 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 590 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 578 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 570 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 564 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 552 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 541 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 514 / 0 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 502 / 2e-178 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 493 / 2e-175 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041426 pacid=23180040 polypeptide=Lus10041426 locus=Lus10041426.g ID=Lus10041426.BGIv1.0 annot-version=v1.0 ATGGGCTGCTTTATCTGTGGTGGAAAGTCACACAAAAAGAATGCCAAGAAACTCCACAGGAAACAACAGCCTCATGATTTCAATCAAACCAAGCTCCAGC AACACAACAACAACAACAACAAGCCTGATGATCAGATCCCGTCTTCTTCAGATAAGATAAAGTCAAGTATCACCCAAGAGTTGAAGAAGGAGGCACTCAA GGAGGAGGGAGGATCAGATAGCATAGCGGCAAACACATTTACATTTCGTGAGTTGGCTGCTGCAACTAAGAATTTTAGGGCAGATTGTCTCTTGGGCGAA GGAGGTTTTGGCCGCGTATATAAAGGGAGATTAGATAGCACCAATCAGGTTGTTGCTATCAAGCAACTTGATCGAAACGGCCTGCAAGGGAACAGGGAAT TCTTGGTTGAAGTATTGATGTTAAGCCTGCTTCACCATCCGAACCTAGTGAACTTGATTGGCTATTGTGCTGATGGCGACCAGAGACTCTTAGTATATGA GTACATGCCATTAGGATCTTTGGAAGACCATCTACATGATCTGCCGCTGGATAAAAGGCCACTTGATTGGAACACAAGAATGAAAATTGCTGCAGGTGCT GCCAAGGGGTTGGAACATTTACATGATAAGGCTAGACCTCCTGTTATATACCGTGACCTGAAATGCTCAAACATTTTACTGGATGAAGGTTTTCACCCGA AGCTATCCGATTTTGGCTTGGCAAAATTGGGTCCAGTTGGGGACAAGACACATGTTTCTACTAGAGTAATGGGTACGTATGGTTACTGCGCACCAGAATA CGCGATGACAGGTCAGCTTACATTAAAATCAGATGTATATAGCTTCGGCGTTGTTCTCCTTGAGATGATTACCGGGCGGAAAGCCATTGACAACTCAAGA GCTGCTGGGGAGCGAAATCTGGTCGCATGGGCTCGGCCGTTGTTCAAGGACCGCAGGAAGTTCGGGCAGATGGCTGACCCGTCACTCCAAGGCAATTATC CAGTGAGGGGATTGTATCAAGCTCTTGCAGTGGCAGCAATGTGTGTTCAAGAACAGCCAAATATTAGACCTTTGATTGCTGATGTTGTTACAGCCCTTAC ATATCTCGCTTCGCAGAAATACGATCCGGACCATGGAGGAGCTAGAAGATTGTAG
AA sequence Show only first row Show all	>Lus10041426 pacid=23180040 polypeptide=Lus10041426 locus=Lus10041426.g ID=Lus10041426.BGIv1.0 annot-version=v1.0 MGCFICGGKSHKKNAKKLHRKQQPHDFNQTKLQQHNNNNNKPDDQIPSSSDKIKSSITQELKKEALKEEGGSDSIAANTFTFRELAAATKNFRADCLLGE GGFGRVYKGRLDSTNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPLDKRPLDWNTRMKIAAGA AKGLEHLHDKARPPVIYRDLKCSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEMITGRKAIDNSR AAGERNLVAWARPLFKDRRKFGQMADPSLQGNYPVRGLYQALAVAAMCVQEQPNIRPLIADVVTALTYLASQKYDPDHGGARRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	0	1
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	2.4	0.8704
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	3.0	0.8744
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	3.9	0.8691
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	4.2	0.8528
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	5.2	0.8402
AT2G02410			unknown protein		Lus10026272 [exp]	6.9	0.8304
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	8.1	0.8611
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	10.5	0.8181
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	11.3	0.8638
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10015459 [exp]	12.7	0.8152

Compare expression of checked genes

Lus10041426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.