Plant FIBer expression Database

Lus10041427 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G123100
[exp]
40 / 0.0006 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1)
Potri.010G122400
[exp]
39 / 0.0007 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10041427 pacid=23146945 polypeptide=Lus10041427 locus=Lus10041427.g ID=Lus10041427.BGIv1.0 annot-version=v1.0
ATGGACGATGCGGAGCTGGATTACCACCACCAATCACAACCCAACACGTCATCCTCTTCCTCCCCCTCTCCCAGACTAAAGCTCTTTGGCTTCAGCGTCG
ATCAAGACAATTATAATAATAATAATAGTAACACTTACACCGACGACAACACCAACTACTACTACAACCACGAACATCTCACATCCCCGACCACCGCCGA
CTCCCTAGAATCCAGCTGTTTCCCAGCTTCAACACATCCGCCGCCAGCCGCCGACAGCAACAATAGGAAGTATGAGTGCCAGTACTGCTGTACCGCCCCA
CACGTCGGTGTCTCCCTCGGCGCTGTCTTTACTGGTGGTGGTGGTGGTGGCGGGAGAGGCGCAGGGGGGTTAATGTATGGTGGCGCCGTAGGAGAGCTTT
CGCCTGGTGGGTCCCTTCATCATGGTGGAGGAGCGCACCACTACAGTTCGGATGGGCCGACCTCGCTTAGCAGATTCTCGAAAGGAGAAGGTGGGCCTAG
TTTTGATGAGTCACTGAGCCTGGACTTACATCTCAGTCTCGCTCCTGCTGGCCCATGA
AA sequence
>Lus10041427 pacid=23146945 polypeptide=Lus10041427 locus=Lus10041427.g ID=Lus10041427.BGIv1.0 annot-version=v1.0
MDDAELDYHHQSQPNTSSSSSPSPRLKLFGFSVDQDNYNNNNSNTYTDDNTNYYYNHEHLTSPTTADSLESSCFPASTHPPPAADSNNRKYECQYCCTAP
HVGVSLGAVFTGGGGGGGRGAGGLMYGGAVGELSPGGSLHHGGGAHHYSSDGPTSLSRFSKGEGGPSFDESLSLDLHLSLAPAGP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G68360 C2H2ZnF C2H2 and C2HC zinc fingers sup... Lus10041427
[exp]
0 1
AT3G52560 MMZ4 ,UEV1D ,UE... MMS2 ZWEI HOMOLOGUE 4, ubiquit... Lus10029415
[exp]
4.8 0.7906
AT3G46010 ATADF1, ADF1 actin depolymerizing factor 1 ... Lus10025319
[exp]
6.3 0.7708
AT2G04410 RPM1-interacting protein 4 (RI... Lus10016623
[exp]
11.0 0.7630
AT5G58060 ATYKT61, ATGP1,... SNARE-like superfamily protein... Lus10019047
[exp]
13.9 0.7442
AT2G38310 RCAR10, PYL4 regulatory components of ABA r... Lus10012231
[exp]
14.7 0.6855
AT5G58060 ATYKT61, ATGP1,... SNARE-like superfamily protein... Lus10036297
[exp]
31.5 0.7192
AT1G04690 KV-BETA1, KAB1 potassium channel beta subunit... Lus10023674
[exp]
56.0 0.6730
AT2G29700 ATPH1 pleckstrin homologue 1 (.1) Lus10018222
[exp]
57.8 0.6154
AT2G36060 MMZ3 ,UEV1C UBIQUITIN E2 VARIANT 1C, MMS Z... Lus10004211
[exp]
61.6 0.6486
AT5G62610 bHLH bHLH079 basic helix-loop-helix (bHLH) ... Lus10033120
[exp]
71.0 0.6036

Lus10041427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.