Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38830 672 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT2G31170 620 / 0 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT3G56300 542 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034343 [exp] 1058 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10010336 [exp] 1023 / 0 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10021862 [exp] 1019 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001921 [exp] 581 / 0 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001953 [exp] 241 / 9e-75 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001954 [exp] 198 / 3e-56 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122500 [exp] 760 / 0 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.018G024300 [exp] 612 / 0 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.008G122901 [exp] 0 / 1 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01406 [flax] [poplar] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10041428 pacid=23146879 polypeptide=Lus10041428 locus=Lus10041428.g ID=Lus10041428.BGIv1.0 annot-version=v1.0 ATGGCGGATGGAGCAGAGGTAGAGAAGAAGGAGTTCAGGTTGTACAATACAATGAGTAAAACCGTGGAGATTTTCAAGCCCATTGTTCGTGGCAAAGTTG GCATGTACGTGTGTGGTGTAACTGCCTACGACCTAAGCCACATTGGACATGCTCGTGCTGCGGTAGTATTTGATGTTCTCTTCAGGTACCTGCAGCACTT GGGTTATGAAGTTACCTATGTGAGGAATTTTACGGATATTGATGACAAGATAATTAAGCGTGCAAATGAACTTAATGAAGATCCATTGTCCTTAAGTAAG CGCTTCTGTGAAGAGTATCTTCTTGACATGGGAAACCTGCAATGCCTGCCTCCAACTCATCAGCCACGGGTAACTGAACACATGGACAATATCAAGAACA TGATCATGCAGATTATGCAAAATGGATGTGCATATGCTGTTGAAGGCGACGTGTTCTTTGCGGTTGAGAAATCCCCAAACTACGGGCAGTTATCTGGGAG GAAGTTGGAAGACAACAGAGCCGGTGAACGTGTTGCAGTTGACTTAAGAAAGCGAAATCCTGCAGACTTCGCTCTCTGGAAGGCTGCAAAGGAACATGAA CCGAGATGGGAAAGCTCATGGGGACCGGGACGACCAGGATGGCATATTGAATGCAGTGCAATGAGTGCACAATATCTTTCTTTCAAATTTGATATTCACG GTGGGGGAAGCGATTTGATCTTCCCACATCATGAAAATGAAGTAGCTCAAAGTGGTGCAGCTTGCAGCGAAAGCAAAATAAATTTTTGGGTTCACAATGG ACATGTCACCAATAATCATTTGAAGATGTCAAAATCATTGGGCAATTTTTTCACCATTCGTCAGATTATGGAAAAGTACCATCCACTGGCTTTGAGGATG TTCTTGATGAGTGCTCACTACCGTTCCCCGCTTAATTACTCCATTGGTCAGATAGAAAAGGCGTCAGATACAGTTTCTTACATTTATCAGACGTTGCACG ACTGTGAGGTTGCTTTATTACCATTTCAAGAAAGCTTAAAGGAAGAAAGCACCACAAAGAATGAAAAGAAAGACAAGACCATTCAGAAGGCCCAAGAATG CATCACTAGCCTGCAAGATGATTTTGAAGCTAAAATGTCCGAGGATCTAAACACGTCACATGTGTTAACTGGTGCTTTCCATGAAGCTTTGAAGTTCCTA AATGCTAATTTAAGCCCTCCAAAGAAGAAGCAGCAGAAGCAACAACTAACGTCATTACCCAAGTACCTTGCTGAATTAGCAAGAGAAATTGAGAGGGTAC TTAGGATTCTGGGCTTGCTGCCAACTTGCAGCTATAGCGAGGTATTGCAGCAGTTCAAAGAGAAGGCATTGATTAGGGCGGAACTGGAGGAAGAGGATGT TGGTCGGCTGATTGAAGATAGAAAAGCTGCAAGGAAAAATAAGGAGTTTGCAAGAAGTGATGAGATCAGAGCTGATTTAGCTAAGAAGGGAATTGCACTG ATGGATGTTGGGACTGAAACCGTTTGGAGACCGTGTGTTCCTGTCGTGCAGGAAGAAGAGGCAGCAGCTGTAGCAGCAGCAGTAGAGGCAGTAGGGTTAG GGGAGCAGAGTTCATCAACATCAGCGCCAGGTTCACGGCGAGATCAAAGGGTTAGTTGGAGTTCTGGATACACTTACTCATTCAAACAACAGTTCTCAAG GAATTCTTAG
AA sequence Show only first row Show all	>Lus10041428 pacid=23146879 polypeptide=Lus10041428 locus=Lus10041428.g ID=Lus10041428.BGIv1.0 annot-version=v1.0 MADGAEVEKKEFRLYNTMSKTVEIFKPIVRGKVGMYVCGVTAYDLSHIGHARAAVVFDVLFRYLQHLGYEVTYVRNFTDIDDKIIKRANELNEDPLSLSK RFCEEYLLDMGNLQCLPPTHQPRVTEHMDNIKNMIMQIMQNGCAYAVEGDVFFAVEKSPNYGQLSGRKLEDNRAGERVAVDLRKRNPADFALWKAAKEHE PRWESSWGPGRPGWHIECSAMSAQYLSFKFDIHGGGSDLIFPHHENEVAQSGAACSESKINFWVHNGHVTNNHLKMSKSLGNFFTIRQIMEKYHPLALRM FLMSAHYRSPLNYSIGQIEKASDTVSYIYQTLHDCEVALLPFQESLKEESTTKNEKKDKTIQKAQECITSLQDDFEAKMSEDLNTSHVLTGAFHEALKFL NANLSPPKKKQQKQQLTSLPKYLAELAREIERVLRILGLLPTCSYSEVLQQFKEKALIRAELEEEDVGRLIEDRKAARKNKEFARSDEIRADLAKKGIAL MDVGTETVWRPCVPVVQEEEAAAVAAAVEAVGLGEQSSSTSAPGSRRDQRVSWSSGYTYSFKQQFSRNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10041428 [exp]	0	1
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	8.1	0.7281
AT3G12150			unknown protein		Lus10035501 [exp]	15.9	0.7199
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	24.6	0.7022
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	27.5	0.6996
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	36.4	0.6840
AT4G36440			unknown protein		Lus10041785 [exp]	43.9	0.6184
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	45.7	0.6713
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10032381 [exp]	50.6	0.6813
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031126 [exp]	52.3	0.6496
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	63.9	0.6602

Compare expression of checked genes

Lus10041428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.