Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39980 977 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 213 / 2e-60 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 206 / 8e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 201 / 8e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 197 / 2e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 195 / 1e-53 RPF2 rna processing factor 2 (.1) AT1G63150 194 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 187 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 189 / 7e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 187 / 4e-50 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034342 [exp] 1281 / 0 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014244 [exp] 190 / 2e-52 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10002107 [exp] 191 / 2e-51 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 191 / 3e-51 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 185 / 2e-50 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10043417 [exp] 179 / 5e-47 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003657 [exp] 171 / 5e-45 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10013283 [exp] 170 / 8e-45 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10006962 [exp] 171 / 1e-44 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075700 [exp] 1035 / 0 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 193 / 5e-52 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 191 / 2e-51 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 189 / 8e-51 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 186 / 8e-50 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.016G025600 [exp] 182 / 5e-49 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 179 / 2e-48 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 179 / 2e-48 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 182 / 5e-48 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.004G074500 [exp] 177 / 1e-47 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041429 pacid=23146722 polypeptide=Lus10041429 locus=Lus10041429.g ID=Lus10041429.BGIv1.0 annot-version=v1.0 ATGTCCTCCCTTTCTTTCTCTGCTCTGCAATTCCTACCCATTGATTCTTTTTCTTCCCCTACCCATTTGCGTGTTCCCTTTCCACACTCCCGCTTTTACT CCGACACTGTCGCCGCCTGTACTTCCTCCGGAACCCATCTCCTCCGCGCTGCGGCTATCAGGAAAGATGTCTGGACCAGAACACAAACGCAGACCCAGGA GCCCATTTATCTGGATCGCACCATTGACATGGATGAACTCCTCTCTTCCATCAGACAGACCCAAGACGAGCATGAACTCTACTGCTTATTATCTCCGTAC AACGACAGACAGTTGTCGATTCGTTTCATGGTCTCCCTCCTCTCTCGCGAACCGGATTGGCAGAGGTCTCTTGCCCTTCTCGATTGGATCAACGAAGTGG CCCGCTATTCCCCTTCCGTGTTCGCCTACAACGTGGTGCTGAGAAATGTGCTCAGGGCCAAAAGATGGGAGCTTGCACACGGCCTGTTCGATGAAATGCG CCAGAGAGGTTTGGCCGCCGATAAATACACTTATTCTACGCTGATTACCGAATTCGGTAAATCAGGCAAGTTCGATTCTTCCCTGTTCTGGCTTCAGCAG ATGGAGCAAGATGGAGGAGTCTCTGGTGACCTTGTCTTGTACAGTAACTTGATTGAGCTTGCGAGGAAGTTGTGTGATTACTCCAAGGCTATATCAGTCT TTATGAGATTGAAGAGGAAAGGGATTACGCCTGATTTAGTTGTGTATAACTCGATGATCAATGTGTTCGGGAAAGCAAAGCTTTTCAGGGAAGCCAGAAT GTTGTTGGAGGAAATGAGAGATGTGGAGGTCCCTCCTGATACTGTAAGTTACGCCACTTTGTTGACGGTTTACGTAGAGAATGGTAAGTTTGTTGAGGCC CTATCTGTATTTGCCGAGATGAATGAGGCTCAGTGCCCGCTTGATCTCACGACGTGCAATATAATGATGGATGTTTATGGACAGCTTGATATGGCTAAAG AAGCAGATACTTTGTTTTGGAGCATGAGGAAGATGGGAATTGAACCTACCGTGGTAAGTTACAACACCCTTCTGAGGGTTTACGGAGAAGCTGAACTTTT CGGGGAGGCAATCCATCTGTTTAGGTTGATGCAGAGGAAAGAGATTGAACAGAATGTGGTTACGTTTAACACAATGGTCATGATCTACGGGAAAACACTT GAGCATGACAAGGCTGCGAACCTGATCCAGGAAATGCAGAAGAGAGGCATTGAGCCCAACGCAATCACCTACGCTACAATCATTTCCATTTGGGAAAAGG CTGGTAAACTAGATAAGGCAGCAATGTTGTTCGAAAAGCTGAGGAGTTCTGGTGCAGAGATTGACGATGTACTCTACCAAACAATGATGGTGGCTTATGA GAGGGCAGGTTTAGTGGGTCAGTCGAAGCGTCTTTTGCATGAACTGAAGAGACCAGATAACGTCTCTAGGGACACGGCTATCAAAATTCTTGCTAAAGCT GGTAGGATAGAAGAGGCAACCTGGGTATTCCGCCAGGCTGTTGAAGCTGGAGAGGTGAAGGATATTTCTGTGTTCGGATGCTTGATAAGCCTATTGTCAA GGAACAAGAAGCACAAGCATGTGGTGGAAGTGTTTGAAAATATGAGAGACTGTGGCTATTTCCCTGATTCCGATGTTATTGCTCTTGTGCTTAATGCGTA CGGGAAGCTGCGGGAATTCGAGAAAGCAGATGGTGTTTATAGGGAAATGCAGAGGGAAGGGTGTGTTTTCCCAGATGAAGTTCACTTCCAGATGCTTAGT CTGTATGGTGCAAGGAGGGATTTTGTGGCAGTAGAAACCCTATTTGAGAGGCTGGACTCCGATCCAAACATCAACAAGAAGGAGTTGCATCTTGTTGTTG CCGGGATATTTGAAAGGGCGAATAGGTTAACTGATGCGTCCCGAATCATGAACAGAATGAAGACAGCGGGAATGTCCAACTTATTATTATGA
AA sequence Show only first row Show all	>Lus10041429 pacid=23146722 polypeptide=Lus10041429 locus=Lus10041429.g ID=Lus10041429.BGIv1.0 annot-version=v1.0 MSSLSFSALQFLPIDSFSSPTHLRVPFPHSRFYSDTVAACTSSGTHLLRAAAIRKDVWTRTQTQTQEPIYLDRTIDMDELLSSIRQTQDEHELYCLLSPY NDRQLSIRFMVSLLSREPDWQRSLALLDWINEVARYSPSVFAYNVVLRNVLRAKRWELAHGLFDEMRQRGLAADKYTYSTLITEFGKSGKFDSSLFWLQQ MEQDGGVSGDLVLYSNLIELARKLCDYSKAISVFMRLKRKGITPDLVVYNSMINVFGKAKLFREARMLLEEMRDVEVPPDTVSYATLLTVYVENGKFVEA LSVFAEMNEAQCPLDLTTCNIMMDVYGQLDMAKEADTLFWSMRKMGIEPTVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTFNTMVMIYGKTL EHDKAANLIQEMQKRGIEPNAITYATIISIWEKAGKLDKAAMLFEKLRSSGAEIDDVLYQTMMVAYERAGLVGQSKRLLHELKRPDNVSRDTAIKILAKA GRIEEATWVFRQAVEAGEVKDISVFGCLISLLSRNKKHKHVVEVFENMRDCGYFPDSDVIALVLNAYGKLREFEKADGVYREMQREGCVFPDEVHFQMLS LYGARRDFVAVETLFERLDSDPNINKKELHLVVAGIFERANRLTDASRIMNRMKTAGMSNLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10041429 [exp]	0	1
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	3.2	0.9183
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	5.7	0.9113
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	6.2	0.8958
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10015739 [exp]	9.5	0.8685
AT1G53250			unknown protein		Lus10028136 [exp]	12.4	0.8849
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	15.9	0.8865
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10011119 [exp]	16.2	0.8351
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	17.5	0.8813
					Lus10016908 [exp]	18.4	0.8184
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	18.5	0.8719

Compare expression of checked genes

Lus10041429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.