Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68330 77 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034341 [exp] 377 / 1e-132 AT1G68330 117 / 4e-31 unknown protein Lus10009633 [exp] 53 / 7e-08 AT1G48780 93 / 5e-22 unknown protein Lus10009004 [exp] 50 / 5e-07 AT1G48780 98 / 7e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122300 [exp] 167 / 2e-50 AT1G68330 134 / 6e-38 unknown protein Potri.010G122800 [exp] 158 / 7e-47 AT1G68330 136 / 7e-39 unknown protein Potri.004G098700 [exp] 71 / 5e-14 AT1G67050 117 / 6e-32 unknown protein Potri.017G115700 [exp] 70 / 7e-14 AT1G67050 112 / 6e-30 unknown protein Potri.015G045700 [exp] 64 / 1e-11 AT1G48780 107 / 8e-28 unknown protein Potri.012G055300 [exp] 52 / 9e-08 AT1G48780 105 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041430 pacid=23146827 polypeptide=Lus10041430 locus=Lus10041430.g ID=Lus10041430.BGIv1.0 annot-version=v1.0 ATGGCGGTGGATGTCTGTTCAGAGATTCCAAGTCCAGGTATTATTAGCCCTCGGATTTCCTTCTCCCATGACCTTAATACCAACAACAACCAAACACCGG AAATTTCGGAGGAGTGCCCCAGATTAGATTCCTGTCTTTTGGACTCAGATTTCGATTTCTTCATCGGCGCCGGCGGAACCAATTTCCAGCAAGAGCTTTC ATCCGCTGACGAGCTCTTCTCGAACGGTACCATCTTACCTGTCCAATTTCAGATACAAAAACAGTCATATTGTTATTATTCCCCCACCGGAAACAGAGCA ATTCCCCTGCCTCCTCTTCCTCCGCAGCTGCCGGCGCATGAAGACTCCGACAAGAAGGATGTTCCAAAGCTACTGAAGGAGTTCCTGTCAATGAGTCTGG ACGGAGATGAAGACGACCAAGGTCAAACACCGGCGCTGAAGGTATCGAAATCAGTATGGCCGCAGTTCAAGAGAAGCAACAGTCTCAACAGCATCCGAAG CAGAGGAGGCGACCTATTCCGATCTCTCCATTTTCTTTCACGAAGCCATTCAACTGGATCGGCTCCAATTCTTTCGAGAAACAAATCTGTGCAGTCCTCA TCGAAGGAAAAACCGCATCTACGGAAGCAGAGGTCGGTTCCCTGCGGCAGGAAATCGCCATTTTATCCCAACAATGGTGGACAGCAAAAGTGGAATCAGC CACATCTGAGGAAATGTGGGTCGCATAACGGTGGCGTTAGAATTAGTCCGGTGTTGAACATCCCTTCACCGACATTCATTTCAAGGGGAACGGTCAATCT TTTTGGTTCACTGTTCTGTAACGGTAAGGTTAAAAAGAAGAAGAAGAAGAAGAAGAGATGA
AA sequence Show only first row Show all	>Lus10041430 pacid=23146827 polypeptide=Lus10041430 locus=Lus10041430.g ID=Lus10041430.BGIv1.0 annot-version=v1.0 MAVDVCSEIPSPGIISPRISFSHDLNTNNNQTPEISEECPRLDSCLLDSDFDFFIGAGGTNFQQELSSADELFSNGTILPVQFQIQKQSYCYYSPTGNRA IPLPPLPPQLPAHEDSDKKDVPKLLKEFLSMSLDGDEDDQGQTPALKVSKSVWPQFKRSNSLNSIRSRGGDLFRSLHFLSRSHSTGSAPILSRNKSVQSS SKEKPHLRKQRSVPCGRKSPFYPNNGGQQKWNQPHLRKCGSHNGGVRISPVLNIPSPTFISRGTVNLFGSLFCNGKVKKKKKKKKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68330			unknown protein		Lus10041430 [exp]	0	1
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10033194 [exp]	3.2	0.7371
AT1G53035			unknown protein		Lus10018600 [exp]	6.8	0.7225
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	8.1	0.6947
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	14.5	0.6857
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10007071 [exp]	18.7	0.7028
AT5G50020			DHHC-type zinc finger family p...		Lus10020844 [exp]	21.8	0.6691
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10009858 [exp]	30.6	0.6841
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10016777 [exp]	30.6	0.6234
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	33.8	0.6447
AT5G14410			unknown protein		Lus10022295 [exp]	34.3	0.7014

Compare expression of checked genes

Lus10041430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.