Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25350 1290 / 0 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) AT5G26710 256 / 2e-74 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT5G19720 217 / 4e-66 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) AT5G64050 51 / 2e-06 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034339 [exp] 1567 / 0 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10014335 [exp] 233 / 6e-66 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10026044 [exp] 231 / 2e-65 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10022659 [exp] 46 / 0.0001 AT5G64050 892 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10012512 [exp] 46 / 0.0001 AT5G64050 887 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122200 [exp] 1365 / 0 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122866 [exp] 602 / 0 AT1G25350 558 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122932 [exp] 522 / 0 AT1G25350 500 / 1e-173 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.005G001200 [exp] 238 / 1e-67 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.013G000400 [exp] 230 / 8e-65 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.009G169700 [exp] 52 / 2e-06 AT5G64050 922 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03950 [flax] [poplar] tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain PF04557 [flax] [poplar] tRNA_synt_1c_R2 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 CL0039 [flax] [poplar] HUP PF00749 [flax] [poplar] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain CL0039 [flax] [poplar] PF04558 [flax] [poplar] tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Representative CDS sequence Show only first row Show all	>Lus10041433 pacid=23146663 polypeptide=Lus10041433 locus=Lus10041433.g ID=Lus10041433.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAAGAAGAGAGCTTAACGGATACAGTGGAGCTGTTTCTGAAGATTGGGTTGGACGAGAGAACTGCGAGGAATACCATCGCCAACAACAAAG TTACTACCAATCTCACTGCCGTTATTCACGAGGCTGGTGTGACTGAGGGATGTAATCGAACAATTGGAAATCTACTCTACACGGTTGCAACGAAGTACCC TGCCAATGCCCTTGTACATCGCCCTGCTCTGTTGGAATATGTCGTCTCTTCTAAGATTAAGACCCCAGCCCAGCTTGAAGCTGCCTTCTCATTTCTATCT AACACTGCTTCCGGAACTCTTGAGTTGAAGGATTTCGAAGAAGCATGTGGAGTGGGGGTCGAGGTCTCTGTGGAAGATATTCAGAAGACTGTTAGCGAGG TGTTTGAGCTTACTAAGGATTCTATTCTTGCTATGCGTTATCGAACAAATGTGGGTGACCTATTTGCAAATGTTCGCAAGCGGCTTCCATGGGCTGACCC AAAAGTTGTGAAGCAACTCATAGATGCAAAAATGTATGAGTTGCTTGGTCAAAGAACAGCAGCCGATAATGAGAAGCCTGCTAAACAGAAAAAAGAAAAG CCTGCTAAAGTTGAGGAAAAGAAGGTCCCCGACGACAATCAAGTGCAGCCCTCTGAAGAGGAACTTAATCCATTCTTAATCTTTCCCAATCCAGAGGAAA ATTTTAAGGTGCACACAGAAATATTCTTCAGTGATGGCCCAGTTCTAAGGTGCTCCAACACAAAGGAAAAGCTAGACAAACACCTGAAGTCAACAGGTAG TAAAGTATACACCCGTTTCCCGCCAGAGCCAAATGGTTATCTGCACATTGGCCATGCTAAGGCAATGTTTGTTAGCTTTGGCCTCGCTAAAGAGAGAGAC GGATGCTGCTACCTTAGGTTTGACGATACAAATCCAGAAGCAGAGAAGAAAGAGTACATTGATCACATACAAGAAATTGTCGGCTGGATGGGTTGGAAGC CTTTTAAGATAACATACACTAGTGATTATTTCCAAGAACTCTATGAGTTGGCCGTTGAACTGATTAGAAGGGGTCATGCTTATGTTGATGAACAGACAGC AGAAGAGATTAAAGAGTACAGAGAGAAGAAGATGAACAGTCCTTGGAGAGATAGACCTATAGCAGAATCTCTGAGGCTCTTCGATGAAATGAAACAAGGA AAGATTGAAGAAGGCAAAGCAACACTCAGGATGAAACAAGACATGCAGAGCGACAATTTTAATATGTATGACCTAATTGCTTACCGAATAAAGTTCACTC CTCATCCACATGCAGGAGACAAGTGGTGCATCTACCCAAGTTATGATTATGCTCACTGTATCGTGGACTCTCTTGAAAACATCACTCATTCTCTTTGTAC TTTGGAATTCGAGACAAGACGTGCATCCTATTACTGGCTGTTGCATTCACTAGACCTTTATCAGCCTCATGTGTGGGAATACTCAAGGCTAAACATTACA AACACAGTAATGTCAAAGCGTAAGTTGAACTTTTTAGTGACAAAGAATCATGTAGATGGCTGGGATGACCCCCGCCTCATGACTTTAGCCGGTTTAAGGC GTAGAGGAGTGACATCATCAGCAATTAATGCATTTGTCCGAGGAATTGGAATCACTAGAAGTGACTGTAGTATGATACGCTTGGATCGGCTTGAATATCA CATAAGAGAAGAACTAAATAAGACTGCAGCTCGTACATTGGTTGTGCTAAATCCTCTGAAGGTGGTCATTACCAACCTAGATTCTTCTTCTGCTATGGAG CTTGATGCTAAGAAATGGCCTGATTCTCAAACAGAAGATTCTTCTGCTTTCTATAAGGTTCGTTTTTCTAATGTTGTATATATTGAGCAATCGGATTTCC GGATGAAAGATTCAAAGGATTACTATGGTCTGGCACCTGGCAAATCTGTCCTCCTCAGGTATGCTTTCCCCATAAAGTGTACAGATGTAGTATTAGCAGA TGATAACCAGACTATTCTTGAGATTCGGGCTGAATATGATCCCTCAAAGAAGACAAAGCCAAAGGGAGTTCTGCACTGGGTTTCTGAACCTTCACCTGGG GTAGAACCTCTGAAATTGGAAGTCAGATTGTTTGACAAACTGTTTAACACTGAGAATCCCGCTGAGCTTGATGATAAGTGGCTTGGTGATTTGAACCCAA ATTCCAAGAAAGTTGTGCTTGGTGCATATGCTGTTCCATCGCTTGGAAGTGCTACCATTGGAGATAGATTCCAGTTTGAAAGACTTGGCTATTTCACACC TGACAAGGACTCTACCGTGGAGCATCTTGTTTTCAATCGAATTGTGACGCTGCGAGATAGCTATGGCAAAGTTGGGAAGTAG
AA sequence Show only first row Show all	>Lus10041433 pacid=23146663 polypeptide=Lus10041433 locus=Lus10041433.g ID=Lus10041433.BGIv1.0 annot-version=v1.0 MGVKEESLTDTVELFLKIGLDERTARNTIANNKVTTNLTAVIHEAGVTEGCNRTIGNLLYTVATKYPANALVHRPALLEYVVSSKIKTPAQLEAAFSFLS NTASGTLELKDFEEACGVGVEVSVEDIQKTVSEVFELTKDSILAMRYRTNVGDLFANVRKRLPWADPKVVKQLIDAKMYELLGQRTAADNEKPAKQKKEK PAKVEEKKVPDDNQVQPSEEELNPFLIFPNPEENFKVHTEIFFSDGPVLRCSNTKEKLDKHLKSTGSKVYTRFPPEPNGYLHIGHAKAMFVSFGLAKERD GCCYLRFDDTNPEAEKKEYIDHIQEIVGWMGWKPFKITYTSDYFQELYELAVELIRRGHAYVDEQTAEEIKEYREKKMNSPWRDRPIAESLRLFDEMKQG KIEEGKATLRMKQDMQSDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHSLDLYQPHVWEYSRLNIT NTVMSKRKLNFLVTKNHVDGWDDPRLMTLAGLRRRGVTSSAINAFVRGIGITRSDCSMIRLDRLEYHIREELNKTAARTLVVLNPLKVVITNLDSSSAME LDAKKWPDSQTEDSSAFYKVRFSNVVYIEQSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTDVVLADDNQTILEIRAEYDPSKKTKPKGVLHWVSEPSPG VEPLKLEVRLFDKLFNTENPAELDDKWLGDLNPNSKKVVLGAYAVPSLGSATIGDRFQFERLGYFTPDKDSTVEHLVFNRIVTLRDSYGKVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	0	1
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	1.0	0.9284
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	3.0	0.8949
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	3.7	0.9039
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10001650 [exp]	4.5	0.8933
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	5.3	0.8890
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	8.5	0.8794
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10013308 [exp]	10.9	0.8716
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	11.5	0.8589
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	12.0	0.8729
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	14.1	0.8886

Compare expression of checked genes

Lus10041433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.