Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68290 327 / 2e-113 ENDO2 ,ENDO 2 endonuclease 2 (.1) AT4G21585 268 / 4e-90 ENDO4 endonuclease 4 (.1) AT1G11190 258 / 6e-86 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1) AT4G21600 246 / 3e-81 ENDO5 endonuclease 5 (.1) AT4G21590 242 / 9e-80 ENDO3 endonuclease 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034336 [exp] 452 / 1e-162 AT1G68290 391 / 5e-138 endonuclease 2 (.1) Lus10018451 [exp] 262 / 1e-87 AT4G21585 408 / 2e-144 endonuclease 4 (.1) Lus10018452 [exp] 248 / 2e-82 AT1G11190 440 / 3e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10011232 [exp] 254 / 4e-81 AT1G11190 441 / 6e-153 ENDONUCLEASE 1, bifunctional nuclease i (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123500 [exp] 339 / 3e-118 AT1G68290 412 / 1e-146 endonuclease 2 (.1) Potri.011G044400 [exp] 288 / 9e-98 AT4G21585 448 / 3e-160 endonuclease 4 (.1) Potri.011G044500 [exp] 254 / 1e-84 AT1G11190 440 / 5e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0368 [flax] [poplar] PhosC-NucP1 PF02265 [flax] [poplar] S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence Show only first row Show all	>Lus10041437 pacid=23146650 polypeptide=Lus10041437 locus=Lus10041437.g ID=Lus10041437.BGIv1.0 annot-version=v1.0 ATGATTGATCTTAAATTTAACGGATACTCTCAGACAGCAGCTTTAGCCTTTATTTGTGGTCTTACACAATTCACACCAGCAGCACCCCTGATACGTTACT TTCGCTATCACTGGTCATCTCCACTTCACTACATTGACACCCCTGATAACCTCTGTACCTACTCCTACAATCGGGACTGCAAGGATGAGACTGGAGAGAA GGGGAGGTGTGTTGATGGGGCAATCCAGAATTACACCACCCAACTCCTTACTTACGACACTCACTCCTTGGACAAATCTGACTATAACCTGACAGAAGCT CTGCTCTTTCTTTCCCATTTCATTGGTGACATCCATCAGCCTCTTCATGTGGGGTTCACATCAGACAAAGGAGGCAACACCATTGACATCCATTGGTACA CAAGGAAGACTGTCCTTCACCATGCATGGGATGACAACATAATAATGACAGCAGAAGACCAGTACTACGACTCCAAAGTTGAGGAGTTCATCGATGCCAT TCAGAACAACATAACTTCGGGATGGTCTGATCTGGTCCCAAAATGGGAGGCCTGTGGCGGTAACAACACTGCTTGCCCAACTGTGTATGCATCGGAAGGT ATAAAGGCAGCATGCGATTGGGCCTACAAAGGTGTTCAAGAGGATTCCACATTGGATGATGATTATTTCGAGTCCAGGTTACCAATAGTGAAGTTGAGGC TAGCACAAGCAGGAGTACGATTGGCTGCTACACTTAACCGCATCTTCCAATGA
AA sequence Show only first row Show all	>Lus10041437 pacid=23146650 polypeptide=Lus10041437 locus=Lus10041437.g ID=Lus10041437.BGIv1.0 annot-version=v1.0 MIDLKFNGYSQTAALAFICGLTQFTPAAPLIRYFRYHWSSPLHYIDTPDNLCTYSYNRDCKDETGEKGRCVDGAIQNYTTQLLTYDTHSLDKSDYNLTEA LLFLSHFIGDIHQPLHVGFTSDKGGNTIDIHWYTRKTVLHHAWDDNIIMTAEDQYYDSKVEEFIDAIQNNITSGWSDLVPKWEACGGNNTACPTVYASEG IKAACDWAYKGVQEDSTLDDDYFESRLPIVKLRLAQAGVRLAATLNRIFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10041437 [exp]	0	1
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	4.0	0.8271
AT4G15040			Subtilisin-like serine endopep...		Lus10028843 [exp]	13.7	0.7332
AT3G52460			hydroxyproline-rich glycoprote...		Lus10004193 [exp]	19.2	0.8112
					Lus10029082 [exp]	24.4	0.7048
					Lus10027563 [exp]	33.5	0.7692
					Lus10030648 [exp]	48.9	0.7546
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10042680 [exp]	99.4	0.7273
AT4G11170			Disease resistance protein (TI...		Lus10006732 [exp]	195.6	0.7143
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024296 [exp]	210.7	0.7066

Compare expression of checked genes

Lus10041437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.