Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25400 99 / 4e-24 unknown protein AT1G68440 89 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034335 [exp] 397 / 4e-140 AT1G25400 145 / 3e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123600 [exp] 100 / 2e-24 AT1G25400 141 / 1e-39 unknown protein Potri.008G121700 [exp] 84 / 2e-18 AT1G25400 112 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041438 pacid=23146808 polypeptide=Lus10041438 locus=Lus10041438.g ID=Lus10041438.BGIv1.0 annot-version=v1.0 ATGGAGGTTCCCGTGATCAATAGAATAGGCGACTTCGAAGGCGGAATCGCTTCTCTTCAAAACCCATCTGTATTTTCTTCCCGAGCTTTTGCTTCCTCTG GAATCGGAAGAATTTACCAGGCTTACAGTTTCTGGAAATGGGGCACTCTGTTTCTCGCAGTATTACTCGCCTACTTCACCACAATCATCACCCGCGTTCG AGTCCTTCTCTTTCGACTTCACAAGAGCCACCCGATTTCTTCAGAGACACTTCTTGTCCAGGAAGAGTCAGATTACGATACCGATTCCGAATTCTCCGAT GATGACGAATCTGAGGATGAAGACGAAGACGGGGAAGAAGATGAAGAAGACGAAGGTGATGAGGATTTTAGCTTCGGTGGCGCGTCGAATTTCGGGTTGA GGCTCCGGCGGCGGAGCAGCAGTATTGGGGATTTCTTCTCGTGGCCCGAATTCGCCAACGGGACGAGTAGTGTAGTGAAGATGTGGGACAATTTCGGGTT GGGGTTGGATCTGAATCTCGACGGCGGAGGAGACCAGAATTCGCGCTCGATTTTCGGAGGCGGCGAGATCCTTGGGGCGCCGGCGGTGATTATTTCGGCG GAGGCGAACATGGCTGGGAACTTGTTGAGGGTGTGGGACAGTCGGGGCGGGAGCCGGATCCCACAGATGCTGGCGGAGTGGCGGTCGAAGCTAGGGAAGA TGGTCAGCGTCAACGCCGGACTTTTAGAGAAGATTAGCGGTGGGGAGTTAACTGTGGCGGATATGAGAAAAGTCAGCTGCTCATCGGTAGTTGGTAGCGT GACGGAATCTGAGACGGCAGACACATGGTGGGACGCGGACGCCGTTAACGGTAGAGACGACGAAGGCGAGTCAACTGAGTGTGACTCGTTTATGCGACGC GGTTAG
AA sequence Show only first row Show all	>Lus10041438 pacid=23146808 polypeptide=Lus10041438 locus=Lus10041438.g ID=Lus10041438.BGIv1.0 annot-version=v1.0 MEVPVINRIGDFEGGIASLQNPSVFSSRAFASSGIGRIYQAYSFWKWGTLFLAVLLAYFTTIITRVRVLLFRLHKSHPISSETLLVQEESDYDTDSEFSD DDESEDEDEDGEEDEEDEGDEDFSFGGASNFGLRLRRRSSSIGDFFSWPEFANGTSSVVKMWDNFGLGLDLNLDGGGDQNSRSIFGGGEILGAPAVIISA EANMAGNLLRVWDSRGGSRIPQMLAEWRSKLGKMVSVNAGLLEKISGGELTVADMRKVSCSSVVGSVTESETADTWWDADAVNGRDDEGESTECDSFMRR G

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25400			unknown protein		Lus10041438 [exp]	0	1
AT5G44860			unknown protein		Lus10036220 [exp]	3.2	0.8621
AT1G13360			unknown protein		Lus10034310 [exp]	4.0	0.8490
AT1G12440			A20/AN1-like zinc finger famil...		Lus10007015 [exp]	4.5	0.8268
AT3G15760			unknown protein		Lus10043269 [exp]	4.9	0.8269
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	6.0	0.8194
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	7.7	0.8311
AT3G52710			unknown protein		Lus10014206 [exp]	8.0	0.8143
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	10.2	0.7794
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	16.1	0.7946
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	17.0	0.7846

Compare expression of checked genes

Lus10041438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.