Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19160 62 / 1e-12 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT4G24650 61 / 3e-12 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT1G25410 58 / 3e-11 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT1G68460 56 / 3e-10 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT3G63110 54 / 1e-09 ATIPT3 isopentenyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034333 [exp] 160 / 2e-49 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034334 [exp] 144 / 8e-44 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034332 [exp] 87 / 3e-21 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10012372 [exp] 56 / 3e-10 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10028015 [exp] 55 / 5e-10 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10041440 [exp] 38 / 0.0002 AT1G68460 77 / 9e-18 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121500 [exp] 83 / 5e-20 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 76 / 1e-17 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.014G139300 [exp] 56 / 3e-10 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.008G202200 [exp] 54 / 1e-09 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.010G030500 [exp] 52 / 3e-09 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 40 / 5e-05 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.004G150900 [exp] 40 / 0.0001 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041439 pacid=23146595 polypeptide=Lus10041439 locus=Lus10041439.g ID=Lus10041439.BGIv1.0 annot-version=v1.0 ATGAAAACCTCACCATATAATATCTTGATTAATTTCTTAGGTGGTAGACTTTCCAAGCTTCTGGTGGCCGGGATGGTGGAGAAGCTGGTCGAGTTCTACT CGTCCGAGTGGGCGGCGAATCAGACCGGGCAGAGGGAGGCGATATGCGTGACGGAGTTCGAGGAGTATTTCGAGGTGGTGAAGAACGGTGACGCCTCTGA TGCGGAGAAGAGGAGGGTGTACCAGAAGGCAGTGAAGGAGACCAAGGACAACACGTGCCGGCTGGCGGAGAGGCAGATGGAGAAGATAAAGAGGCTTAAG GGTTGTGGATAG
AA sequence Show only first row Show all	>Lus10041439 pacid=23146595 polypeptide=Lus10041439 locus=Lus10041439.g ID=Lus10041439.BGIv1.0 annot-version=v1.0 MKTSPYNILINFLGGRLSKLLVAGMVEKLVEFYSSEWAANQTGQREAICVTEFEEYFEVVKNGDASDAEKRRVYQKAVKETKDNTCRLAERQMEKIKRLK GCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19160		PGA22, ATIPT8	isopentenyltransferase 8, ATP/...		Lus10041439 [exp]	0	1

Compare expression of checked genes

Lus10041439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.