Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63110 76 / 3e-17 ATIPT3 isopentenyltransferase 3 (.1) AT1G68460 76 / 5e-17 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT5G19040 72 / 1e-15 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 69 / 1e-14 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT4G24650 67 / 4e-14 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT1G25410 66 / 9e-14 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT2G27760 64 / 1e-12 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT3G19160 63 / 2e-12 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT5G20040 45 / 2e-06 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034332 [exp] 123 / 1e-34 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034334 [exp] 86 / 9e-21 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034333 [exp] 84 / 6e-20 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10006281 [exp] 77 / 2e-17 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10020566 [exp] 73 / 5e-16 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10012372 [exp] 70 / 5e-15 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10028015 [exp] 69 / 1e-14 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10004428 [exp] 66 / 1e-13 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034025 [exp] 66 / 2e-13 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121500 [exp] 82 / 2e-19 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 78 / 6e-18 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.014G139300 [exp] 75 / 9e-17 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.004G150900 [exp] 69 / 1e-14 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.009G147600 [exp] 68 / 3e-14 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.008G202200 [exp] 67 / 3e-14 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.010G030500 [exp] 67 / 7e-14 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 64 / 5e-13 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.001G376600 [exp] 47 / 6e-07 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01745 [flax] [poplar] IPT Isopentenyl transferase
Representative CDS sequence Show only first row Show all	>Lus10041440 pacid=23146685 polypeptide=Lus10041440 locus=Lus10041440.g ID=Lus10041440.BGIv1.0 annot-version=v1.0 ATGGACTACTCTTCATCATCTCCCCCCACCTCTTCTTCTTCCTCCTCGAGCGAGCTGGAGAGCCGCCGCCGTCAAATGGGCAAGGTCCTCGTCATCATGG GAGCCACCGGCTGCGGCAAATCCAAGTTATCAGTCGATCTCTCCACCACCTGCGGCTTCCGCACAGAAATCATCAACTCCGACAAAATGCAAGTCTACAG AGGCCTCGACATCACCACCAATAAAATCACCGTACATGCTGCTTTGTGTGGCTTGATGTCTCCTTCCCCGTTCTGTGCGATTACCTCTGCCGGCGGGTGG ACGAAATGCTGGAATCCGGGATGTTTGAGGAGCTGGCGGAGTTTTACTCGTCGGAGTCGTGGTCAAGTCAGACCGGATTGCTGA
AA sequence Show only first row Show all	>Lus10041440 pacid=23146685 polypeptide=Lus10041440 locus=Lus10041440.g ID=Lus10041440.BGIv1.0 annot-version=v1.0 MDYSSSSPPTSSSSSSSELESRRRQMGKVLVIMGATGCGKSKLSVDLSTTCGFRTEIINSDKMQVYRGLDITTNKITVHAALCGLMSPSPFCAITSAGGW TKCWNPGCLRSWRSFTRRSRGQVRPDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10041440 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	9.5	0.7993
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	10.5	0.7409
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	10.7	0.7678
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	11.7	0.7386
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021049 [exp]	16.9	0.7968
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	17.9	0.7277
AT1G13340			Regulator of Vps4 activity in ...		Lus10017592 [exp]	23.5	0.6291
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	26.6	0.7273
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014044 [exp]	35.2	0.7337
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041224 [exp]	43.8	0.7392

Compare expression of checked genes

Lus10041440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.