Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 410 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 263 / 5e-86 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 262 / 1e-85 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 256 / 3e-83 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G62860 251 / 6e-81 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 251 / 7e-81 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 249 / 2e-80 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 243 / 9e-78 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 226 / 1e-71 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034331 [exp] 755 / 0 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 399 / 1e-138 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 387 / 2e-133 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 369 / 5e-127 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 356 / 3e-122 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028475 [exp] 258 / 6e-85 AT5G16120 338 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040328 [exp] 259 / 4e-84 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 256 / 2e-82 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 256 / 1e-79 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124000 [exp] 543 / 0 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 422 / 2e-147 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 254 / 2e-82 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 247 / 1e-79 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 245 / 1e-78 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 239 / 3e-76 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 238 / 1e-75 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 186 / 1e-55 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 179 / 4e-53 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 177 / 2e-52 AT1G52760 560 / 0.0 lysophospholipase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10041441 pacid=23147021 polypeptide=Lus10041441 locus=Lus10041441.g ID=Lus10041441.BGIv1.0 annot-version=v1.0 ATGATTTCACTCCAAAGCAGCACCCAATATTCACTTGGATCAAACGGTACTCGACGACAGCAGCAGCAGCCAGTCGTTACAGCCACTTTGACGATGAAGA AGAAGCGGATAGAGGGAGTTACAAAAGACCTCAACTTGATTGCTTCCCAGAACTTGGATCACGCTCCCACCAGGAGGCTGGTTCGTTCTGCTTTCACTCA ACTTCAGCTACAGCTGGATCACCCTCTTTACAAGTTGGCTCCTCCAGGGATACGAACAGAGGAGTGGTACGAGATAAACTACAAGGGTCTGGAAGTTTTT TGCAAAAGCTGGATGCCAGAAGCAGGTGTTGGAATCAAAGGTCTAGTATGTTTCTGTCATGGTTATGGTGACACCTGCACCTTCTTCTTTGAAGGGATTG CAAGCCGAATTGCTGCGTCTGGGTATGGTGTGTATGCTATGGACCACCCAGGTTTTGGTCTGTCTGAAGGCTTGCATGGTTACATTGCCAACTTTGATGA CTTGGTTGACAATGCCATTGAACAGTTTACTAAAATTAAAGAAAGACCGGAGTTACGGGGTTTGCCCAAGTTCATATTGGGGCAATCCATGGGTGGAGCT GTTACTCTCAAAGCTCATCTCAAGGAGCCGTCTGAGTGGGATGGCGTAATCCTTATAGCGCCCATGTGTAGAATATCAGATGAGGTGAAGCCTCCTGCGC CAGTTTTGAAGGTATTGACTTGCATGGCTAAATATTTACCAAAGGCTAAGCTTATACCTGGGACAGATTTAGCGGAGCTCGCCTTCAGAGACCCGACCAA ACGAAAAATGGCCGAGTACAATGTGATTTGCTACAGCGACCGAGTGAGATTGCAAACTGCAGTGGAGCTACTAAAGGCTACTGAAGAAATTGAGGCCCAA GTTAACAAGATATCAGCTCCATTGCTGATTCTGCATGGTGCTGCTGATAAAATTACGGATCCTACAGTGAGCCAGTTTTTGTATGAGAATGCTGCGAGTG AGGATAAGACATTGAAGCTTTATGAAGATGGGTTTCACTCAATTCTTGAAGGGGAACCAGATGACAGGATCTTTGCTGTCTTTGATGATCTCATAACGTG GCTCGATAACAGGGCCTCAAAACTACATGGACTTGTGGGCAATACCCACTGA
AA sequence Show only first row Show all	>Lus10041441 pacid=23147021 polypeptide=Lus10041441 locus=Lus10041441.g ID=Lus10041441.BGIv1.0 annot-version=v1.0 MISLQSSTQYSLGSNGTRRQQQQPVVTATLTMKKKRIEGVTKDLNLIASQNLDHAPTRRLVRSAFTQLQLQLDHPLYKLAPPGIRTEEWYEINYKGLEVF CKSWMPEAGVGIKGLVCFCHGYGDTCTFFFEGIASRIAASGYGVYAMDHPGFGLSEGLHGYIANFDDLVDNAIEQFTKIKERPELRGLPKFILGQSMGGA VTLKAHLKEPSEWDGVILIAPMCRISDEVKPPAPVLKVLTCMAKYLPKAKLIPGTDLAELAFRDPTKRKMAEYNVICYSDRVRLQTAVELLKATEEIEAQ VNKISAPLLILHGAADKITDPTVSQFLYENAASEDKTLKLYEDGFHSILEGEPDDRIFAVFDDLITWLDNRASKLHGLVGNTH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	0	1
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10034331 [exp]	1.0	0.9081
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	3.2	0.8441
					Lus10018550 [exp]	5.3	0.8199
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	6.9	0.8008
AT4G21865			unknown protein		Lus10023724 [exp]	7.1	0.8406
					Lus10016654 [exp]	9.0	0.7985
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	10.9	0.7470
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018377 [exp]	22.6	0.7683
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10025986 [exp]	26.9	0.7723
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	27.3	0.8144

Compare expression of checked genes

Lus10041441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.