Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68480 92 / 2e-21 C2H2ZnF JAG JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G13400 87 / 3e-20 C2H2ZnF JGL, NUB NUBBIN, JAGGED-LIKE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G05120 51 / 2e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 44 / 6e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 42 / 0.0001 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G43540 41 / 0.0002 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G68360 42 / 0.0003 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28200 42 / 0.0005 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G48890 40 / 0.0006 C2H2ZnF LATE LATE FLOWERING, C2H2-like zinc finger protein (.1) AT5G27880 41 / 0.0008 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034329 [exp] 245 / 8e-80 AT1G68480 107 / 3e-27 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033867 [exp] 42 / 0.0001 AT5G43540 65 / 1e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014755 [exp] 42 / 0.0001 AT5G43540 63 / 5e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021213 [exp] 42 / 0.0002 AT3G09290 73 / 2e-16 telomerase activator1 (.1) Lus10022204 [exp] 40 / 0.0003 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10026597 [exp] 41 / 0.0004 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10040767 [exp] 41 / 0.0005 AT3G09290 71 / 5e-15 telomerase activator1 (.1) Lus10041160 [exp] 41 / 0.0005 AT5G43540 69 / 8e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10010388 [exp] 41 / 0.0007 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121200 [exp] 102 / 3e-25 AT1G68480 111 / 2e-29 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G124200 [exp] 101 / 6e-25 AT1G68480 120 / 7e-33 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041600 [exp] 48 / 2e-06 AT4G17810 65 / 6e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 45 / 4e-05 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G063800 [exp] 43 / 0.0002 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123800 [exp] 43 / 0.0002 AT5G25160 92 / 4e-22 zinc finger protein 3 (.1) Potri.005G221500 [exp] 42 / 0.0002 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G097900 [exp] 42 / 0.0002 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.010G122400 [exp] 42 / 0.0002 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G116300 [exp] 42 / 0.0002 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041443 pacid=23146826 polypeptide=Lus10041443 locus=Lus10041443.g ID=Lus10041443.BGIv1.0 annot-version=v1.0 ATGCGCAGGAGGAGGCCTACAAGCAGCAGTGGTAACCCACTGGATCTGAACAACTTGCCAGAAGATCTCAACAGTAACCCCCCCACCAGCATCACTACTA CTACTACTGCTACTACTAACAATATTGGTAGAAGAAGAAACAGAGCAAGAGATCATATTCATCACAATGATGACGGAAACGGTGATGAACAAGAGGAAGA AGAGGTAGGGAAGGTCTACGAGTGTAGGTTTTGCTCCCTCAAGTTCTGCAAATCTCAAGCCCTCGGCGGCCACATGAACCGACACCGTCAAGGCATAGAG ACGGAGACGCTGAACAGAGCTCGCCAACTGGTATTGAACAATGACGGCGCCCACCTTCTCGGATATCAATATCCACCGGCGGCTCCAACCTACCATTCCG GAGGAGGAGGAGGGATAATGGGAAGAGATCCGTTATTCAGGCCGCAGGCGCCACCACCGCCTCTTAATTACCAATCAACCAACCGGCTATTCACTTCCGG CAGCGGCGGCGGCGCATCGTCATCTCCCGTCGGAGTCGGATCACCAGCTGGCCATCATCATCCGGCGTCGTATCTGTACGCATCTCCACCCGGGACAGTT AATCAATTACCTCCATACCCTCCTCCGTCTAATCACCATCCATACTCTAACAACGATTACTACATTGGCCACGTCCTCAATCCTGCGGCTGCTCCTCCTC ATCACGCCAATAACGGTACTAGTAGTGGCTATACCTGCATTGGTGCACCGGTAAGTACTAGAACCGGCGGAGTCATGGGGTCCACCCACCACCGGGTAGG GTCGGACGGGAGTGGTGGTGGTGGTGGTGGTAGCGATGGCGGATCTTTGGTCAGCAACAACAGTAGTACTAGTGGCAGTAATCATCATCATCATCGAGGC GCCGAGGAAGAGTTTGCTACTGGATTGAACTGGGGAAGGAGCTACGCGGCCTAG
AA sequence Show only first row Show all	>Lus10041443 pacid=23146826 polypeptide=Lus10041443 locus=Lus10041443.g ID=Lus10041443.BGIv1.0 annot-version=v1.0 MRRRRPTSSSGNPLDLNNLPEDLNSNPPTSITTTTTATTNNIGRRRNRARDHIHHNDDGNGDEQEEEEVGKVYECRFCSLKFCKSQALGGHMNRHRQGIE TETLNRARQLVLNNDGAHLLGYQYPPAAPTYHSGGGGGIMGRDPLFRPQAPPPPLNYQSTNRLFTSGSGGGASSSPVGVGSPAGHHHPASYLYASPPGTV NQLPPYPPPSNHHPYSNNDYYIGHVLNPAAAPPHHANNGTSSGYTCIGAPVSTRTGGVMGSTHHRVGSDGSGGGGGGSDGGSLVSNNSSTSGSNHHHHRG AEEEFATGLNWGRSYAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	0	1
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	1.0	0.9945
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	2.0	0.9862
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	3.0	0.9848
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	3.5	0.9792
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	4.0	0.9786
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	4.6	0.9791
AT3G55930			Pre-mRNA-splicing factor 3 (.1...		Lus10031931 [exp]	4.9	0.9717
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	4.9	0.9821
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	5.3	0.9712
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	5.5	0.9802

Compare expression of checked genes

Lus10041443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.